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3SEY
Asym. Unit
Info
Asym.Unit (383 KB)
Biol.Unit 1 (254 KB)
Biol.Unit 2 (249 KB)
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(1)
Title
:
ZN-MEDIATED POLYMER OF MALTOSE-BINDING PROTEIN A216H/K220H BY SYNTHETIC SYMMETRIZATION (FORM II)
Authors
:
M. Zhao, A. B. Soriaga, A. Laganowsky, M. R. Sawaya, D. Cascio, T. O. Yeat
Date
:
11 Jun 11 (Deposition) - 21 Sep 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,C,E
Biol. Unit 1: A (2x)
Biol. Unit 2: C,E (1x)
Keywords
:
Metal-Mediated Synthetic Symmetrization, Synthetic Symmetrization, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Laganowsky, M. Zhao, A. B. Soriaga, M. R. Sawaya, D. Cascio, T. O. Yeates
An Approach To Crystallizing Proteins By Metal-Mediated Synthetic Symmetrization.
Protein Sci. V. 20 1876 2011
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Hetero Components
(4, 39)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: MALTOSE (MALa)
3b: MALTOSE (MALb)
3c: MALTOSE (MALc)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
4n: ZINC ION (ZNn)
4o: ZINC ION (ZNo)
4p: ZINC ION (ZNp)
4q: ZINC ION (ZNq)
4r: ZINC ION (ZNr)
4s: ZINC ION (ZNs)
4t: ZINC ION (ZNt)
4u: ZINC ION (ZNu)
4v: ZINC ION (ZNv)
4w: ZINC ION (ZNw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
8
Ligand/Ion
ACETATE ION
2
GOL
5
Ligand/Ion
GLYCEROL
3
MAL
3
Ligand/Ion
MALTOSE
4
ZN
23
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:341 , HOH A:416 , HOH A:432 , HOH A:521 , HOH A:522 , HOH A:533 , HOH A:542 , HOH A:567
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
HIS A:216 , GLU A:222 , GLU C:39 , ACT C:382
BINDING SITE FOR RESIDUE ZN A 373
03
AC3
SOFTWARE
HIS A:204 , GLU A:279 , ACT A:383 , ACT A:384 , HOH A:574
BINDING SITE FOR RESIDUE ZN A 374
04
AC4
SOFTWARE
ASP A:165 , GLU A:173 , ASP A:178 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE ZN A 375
05
AC5
SOFTWARE
MET A:1 , LYS A:2 , HOH A:540 , HIS C:220
BINDING SITE FOR RESIDUE ZN A 376
06
AC6
SOFTWARE
HIS A:220 , HOH A:600 , MET C:1 , LYS C:2
BINDING SITE FOR RESIDUE ZN A 377
07
AC7
SOFTWARE
HIS A:40 , HOH A:514 , HOH A:566
BINDING SITE FOR RESIDUE ZN A 378
08
AC8
SOFTWARE
ASP A:83 , HOH A:558
BINDING SITE FOR RESIDUE ZN A 379
09
AC9
SOFTWARE
GLU A:329 , HOH A:451 , HOH A:452
BINDING SITE FOR RESIDUE ZN A 380
10
BC1
SOFTWARE
HIS A:220 , HOH A:560 , HOH A:562 , LYS C:2 , ILE C:3 , GLU C:4
BINDING SITE FOR RESIDUE ZN A 381
11
BC2
SOFTWARE
HOH A:503 , HOH A:563 , HOH A:564 , ASP C:208 , HOH C:544
BINDING SITE FOR RESIDUE ZN A 382
12
BC3
SOFTWARE
PRO A:134 , ASP A:198 , LEU A:199 , ASN A:202 , HIS A:204 , GLU A:279 , ZN A:374 , ACT A:384
BINDING SITE FOR RESIDUE ACT A 383
13
BC4
SOFTWARE
PRO A:134 , ALA A:135 , HIS A:204 , GLU A:279 , ASN A:283 , ZN A:374 , ACT A:383 , HOH A:469 , HOH A:526 , HOH A:574
BINDING SITE FOR RESIDUE ACT A 384
14
BC5
SOFTWARE
MET A:1 , VAL A:9 , GLU A:39 , GLY A:57 , PRO A:58 , HOH A:540 , HIS C:216 , HIS C:220 , GLU C:222 , ZN C:373
BINDING SITE FOR RESIDUE ACT A 385
15
BC6
SOFTWARE
TYR A:91 , PHE A:93 , VAL A:111 , ALA A:302 , VAL A:303 , GLU A:309 , MET A:322
BINDING SITE FOR RESIDUE GOL A 386
16
BC7
SOFTWARE
LYS A:120 , TYR A:243 , GLY A:244 , VAL A:245 , ARG A:317 , HOH A:435
BINDING SITE FOR RESIDUE GOL A 387
17
BC8
SOFTWARE
GLU A:29 , LYS A:30 , GLY A:33 , HOH A:489 , ASP C:42
BINDING SITE FOR RESIDUE GOL A 388
18
BC9
SOFTWARE
ASN C:13 , ASP C:15 , LYS C:16 , TRP C:63 , ALA C:64 , ASP C:66 , ARG C:67 , GLU C:112 , GLU C:154 , PRO C:155 , TYR C:156 , TRP C:341 , HOH C:398 , HOH C:454 , HOH C:465 , HOH C:508 , HOH C:520 , HOH C:559 , HOH C:579
BINDING SITE FOR RESIDUE MAL C 5044
19
CC1
SOFTWARE
GLU A:39 , ACT A:385 , HIS C:216 , GLU C:222
BINDING SITE FOR RESIDUE ZN C 373
20
CC2
SOFTWARE
HIS C:204 , GLU C:279 , ACT C:380 , ACT C:381
BINDING SITE FOR RESIDUE ZN C 374
21
CC3
SOFTWARE
GLU C:173 , ASP C:178 , HOH C:553 , ASP E:165 , GLN E:254
BINDING SITE FOR RESIDUE ZN C 375
22
CC4
SOFTWARE
ASP C:83 , HOH C:425 , HOH C:556
BINDING SITE FOR RESIDUE ZN C 376
23
CC5
SOFTWARE
HOH A:561 , HIS C:40
BINDING SITE FOR RESIDUE ZN C 377
24
CC6
SOFTWARE
LYS A:2 , ILE A:3 , GLU A:4 , HOH A:550 , HIS C:220 , HOH C:542
BINDING SITE FOR RESIDUE ZN C 378
25
CC7
SOFTWARE
GLU C:329 , ACT C:385 , HOH C:420
BINDING SITE FOR RESIDUE ZN C 379
26
CC8
SOFTWARE
ALA C:135 , HIS C:204 , GLU C:279 , ASN C:283 , ZN C:374 , ACT C:381 , HOH C:458 , HOH C:547
BINDING SITE FOR RESIDUE ACT C 380
27
CC9
SOFTWARE
PRO C:134 , ASP C:198 , ASN C:202 , HIS C:204 , GLU C:279 , ZN C:374 , ACT C:380
BINDING SITE FOR RESIDUE ACT C 381
28
DC1
SOFTWARE
HIS A:216 , HIS A:220 , GLU A:222 , ZN A:373 , HOH A:600 , TRP C:11 , GLU C:39 , GLY C:57 , PRO C:58
BINDING SITE FOR RESIDUE ACT C 382
29
DC2
SOFTWARE
ASN C:151 , GLN C:153 , ASP C:210 , TYR C:211 , HOH C:414 , HOH C:454
BINDING SITE FOR RESIDUE GOL C 383
30
DC3
SOFTWARE
ASN C:13 , LYS C:43 , GLU C:45 , HOH C:404 , HOH C:407 , HOH C:559
BINDING SITE FOR RESIDUE GOL C 384
31
DC4
SOFTWARE
GLU C:329 , ZN C:379
BINDING SITE FOR RESIDUE ACT C 385
32
DC5
SOFTWARE
ASN E:13 , ASP E:15 , LYS E:16 , TRP E:63 , ALA E:64 , ASP E:66 , ARG E:67 , GLU E:112 , GLU E:154 , PRO E:155 , TYR E:156 , PHE E:157 , TRP E:231 , TRP E:341 , ARG E:345 , HOH E:385 , HOH E:417 , HOH E:421 , HOH E:426
BINDING SITE FOR RESIDUE MAL E 5044
33
DC6
SOFTWARE
ASP C:165 , GLU E:173 , ASP E:178 , HOH E:387 , HOH E:418
BINDING SITE FOR RESIDUE ZN E 373
34
DC7
SOFTWARE
GLU E:39 , HIS E:216 , GLU E:222 , HOH E:382
BINDING SITE FOR RESIDUE ZN E 374
35
DC8
SOFTWARE
ASP E:56 , HIS E:220 , HOH E:399 , HOH E:413 , HOH E:414
BINDING SITE FOR RESIDUE ZN E 375
36
DC9
SOFTWARE
HIS E:40 , HOH E:428 , HOH E:429
BINDING SITE FOR RESIDUE ZN E 376
37
EC1
SOFTWARE
GLU E:289 , GLU E:292
BINDING SITE FOR RESIDUE ZN E 377
38
EC2
SOFTWARE
GLN E:326 , GLY E:328 , GLU E:329 , ACT E:379
BINDING SITE FOR RESIDUE ZN E 378
39
EC3
SOFTWARE
GLU E:329 , ZN E:378
BINDING SITE FOR RESIDUE ACT E 379
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125,C:108-125,E:108-125)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
3
A:108-125
C:108-125
E:108-125
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3seya_ (A:)
1b: SCOP_d3seyc_ (C:)
1c: SCOP_d3seye_ (E:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
1a
d3seya_
A:
1b
d3seyc_
C:
1c
d3seye_
E:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (383 KB)
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