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3SEX
Asym. Unit
Info
Asym.Unit (253 KB)
Biol.Unit 1 (247 KB)
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(1)
Title
:
NI-MEDIATED DIMER OF MALTOSE-BINDING PROTEIN A216H/K220H BY SYNTHETIC SYMMETRIZATION (FORM II)
Authors
:
M. Zhao, A. B. Soriaga, A. Laganowsky, M. R. Sawaya, D. Cascio, T. O. Yeat
Date
:
11 Jun 11 (Deposition) - 21 Sep 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (1x)
Keywords
:
Metal-Mediated Synthetic Symmetrization, Synthetic Symmetrization, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Laganowsky, M. Zhao, A. B. Soriaga, M. R. Sawaya, D. Cascio, T. O. Yeates
An Approach To Crystallizing Proteins By Metal-Mediated Synthetic Symmetrization.
Protein Sci. V. 20 1876 2011
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Hetero Components
(3, 30)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
2a: MALTOSE (MALa)
2b: MALTOSE (MALb)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
26
Ligand/Ion
IODIDE ION
2
MAL
2
Ligand/Ion
MALTOSE
3
NI
2
Ligand/Ion
NICKEL (II) ION
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , PHE A:157 , TRP A:341 , HOH A:453 , HOH A:467 , HOH A:499 , HOH A:542 , HOH A:610
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
VAL A:245
BINDING SITE FOR RESIDUE IOD A 373
03
AC3
SOFTWARE
ASN A:151
BINDING SITE FOR RESIDUE IOD A 374
04
AC4
SOFTWARE
ALA A:169
BINDING SITE FOR RESIDUE IOD A 376
05
AC5
SOFTWARE
GLU C:222
BINDING SITE FOR RESIDUE IOD A 377
06
AC6
SOFTWARE
ASN A:219
BINDING SITE FOR RESIDUE IOD A 379
07
AC7
SOFTWARE
ASN A:13 , LYS A:43 , HOH A:557
BINDING SITE FOR RESIDUE IOD A 381
08
AC8
SOFTWARE
ARG C:355 , IOD C:382
BINDING SITE FOR RESIDUE IOD A 382
09
AC9
SOFTWARE
GLY A:70 , SER A:74
BINDING SITE FOR RESIDUE IOD A 383
10
BC1
SOFTWARE
HIS A:40 , HIS C:216 , GLU C:222 , HOH C:413 , HOH C:423
BINDING SITE FOR RESIDUE NI A 384
11
BC2
SOFTWARE
HIS A:216 , GLU A:222 , HOH A:414 , HIS C:40 , HOH C:398
BINDING SITE FOR RESIDUE NI A 385
12
BC3
SOFTWARE
LYS C:16 , TRP C:63 , ALA C:64 , ASP C:66 , ARG C:67 , GLU C:112 , GLU C:154 , PRO C:155 , TYR C:156 , TRP C:341 , HOH C:396 , HOH C:430 , HOH C:476 , HOH C:515 , HOH C:571
BINDING SITE FOR RESIDUE MAL C 5044
13
BC4
SOFTWARE
ALA C:169
BINDING SITE FOR RESIDUE IOD C 375
14
BC5
SOFTWARE
VAL C:245
BINDING SITE FOR RESIDUE IOD C 376
15
BC6
SOFTWARE
ASN C:151
BINDING SITE FOR RESIDUE IOD C 378
16
BC7
SOFTWARE
GLY C:188
BINDING SITE FOR RESIDUE IOD C 380
17
BC8
SOFTWARE
GLY A:188
BINDING SITE FOR RESIDUE IOD C 381
18
BC9
SOFTWARE
IOD A:382
BINDING SITE FOR RESIDUE IOD C 382
19
CC1
SOFTWARE
ASN C:219
BINDING SITE FOR RESIDUE IOD C 383
20
CC2
SOFTWARE
HOH C:512
BINDING SITE FOR RESIDUE IOD C 384
21
CC3
SOFTWARE
GLU C:23
BINDING SITE FOR RESIDUE IOD C 385
22
CC4
SOFTWARE
MET C:205
BINDING SITE FOR RESIDUE IOD C 386
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125,C:108-125)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
2
A:108-125
C:108-125
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3sexa_ (A:)
1b: SCOP_d3sexc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
1a
d3sexa_
A:
1b
d3sexc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain C
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (247 KB)
Header - Biol.Unit 1
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