PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3SEU
Asym. Unit
Info
Asym.Unit (134 KB)
Biol.Unit 1 (129 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ZN-MEDIATED POLYMER OF MALTOSE-BINDING PROTEIN A216H/K220H BY SYNTHETIC SYMMETRIZATION (FORM III)
Authors
:
M. Zhao, A. B. Soriaga, A. Laganowsky, M. R. Sawaya, D. Cascio, T. O. Yeat
Date
:
11 Jun 11 (Deposition) - 21 Sep 11 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metal-Mediated Synthetic Symmetrization, Synthetic Symmetrization, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Laganowsky, M. Zhao, A. B. Soriaga, M. R. Sawaya, D. Cascio, T. O. Yeates
An Approach To Crystallizing Proteins By Metal-Mediated Synthetic Symmetrization.
Protein Sci. V. 20 1876 2011
[
close entry info
]
Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: GLYCEROL (GOLa)
3a: MALTOSE (MALa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
MAL
1
Ligand/Ion
MALTOSE
4
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , ASP A:15 , LYS A:16 , TRP A:63 , ALA A:64 , ASP A:66 , ARG A:67 , GLU A:112 , GLU A:154 , PRO A:155 , TYR A:156 , TRP A:231 , TRP A:341 , ARG A:345 , GOL A:387 , HOH A:403 , HOH A:427 , HOH A:495 , HOH A:531 , HOH A:544 , HOH A:549
BINDING SITE FOR RESIDUE MAL A 5044
02
AC2
SOFTWARE
HIS A:216 , GLU A:222
BINDING SITE FOR RESIDUE ZN A 373
03
AC3
SOFTWARE
HIS A:204 , GLU A:279 , ACT A:382 , ACT A:385
BINDING SITE FOR RESIDUE ZN A 374
04
AC4
SOFTWARE
HIS A:220 , ACT A:383 , ACT A:384 , HOH A:428
BINDING SITE FOR RESIDUE ZN A 375
05
AC5
SOFTWARE
ASP A:208
BINDING SITE FOR RESIDUE ZN A 376
06
AC6
SOFTWARE
HIS A:40
BINDING SITE FOR RESIDUE ZN A 377
07
AC7
SOFTWARE
ASP A:198 , GLU A:275 , HOH A:553
BINDING SITE FOR RESIDUE ZN A 378
08
AC8
SOFTWARE
ASP A:83 , HOH A:503
BINDING SITE FOR RESIDUE ZN A 379
09
AC9
SOFTWARE
GLU A:39 , ACT A:386
BINDING SITE FOR RESIDUE ZN A 380
10
BC1
SOFTWARE
TYR A:91 , GLU A:309 , GLU A:310 , HOH A:465
BINDING SITE FOR RESIDUE ACT A 381
11
BC2
SOFTWARE
LYS A:138 , HIS A:204 , GLU A:279 , ASN A:283 , ZN A:374 , ACT A:385
BINDING SITE FOR RESIDUE ACT A 382
12
BC3
SOFTWARE
HIS A:216 , HIS A:220 , ZN A:375 , ACT A:384
BINDING SITE FOR RESIDUE ACT A 383
13
BC4
SOFTWARE
HIS A:220 , ZN A:375 , ACT A:383 , HOH A:523
BINDING SITE FOR RESIDUE ACT A 384
14
BC5
SOFTWARE
PRO A:134 , ASN A:202 , HIS A:204 , GLU A:279 , ZN A:374 , ACT A:382
BINDING SITE FOR RESIDUE ACT A 385
15
BC6
SOFTWARE
GLU A:39 , ZN A:380 , HOH A:545
BINDING SITE FOR RESIDUE ACT A 386
16
BC7
SOFTWARE
ASN A:13 , LYS A:43 , TRP A:63 , HOH A:495 , MAL A:5044
BINDING SITE FOR RESIDUE GOL A 387
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_1 (A:108-125)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_1
PS01037
Bacterial extracellular solute-binding proteins, family 1 signature.
MALE_ECOLI
133-150
1
A:108-125
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3seua_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
D-maltodextrin-binding protein, MBP
(70)
Escherichia coli [TaxId: 562]
(60)
1a
d3seua_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3SEU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help