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Getting 'Exon' information from database.
3SE3
Asym. Unit
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Asym.Unit (205 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
HUMAN IFNA2-IFNAR TERNARY COMPLEX
Authors
:
C. Thomas, K. C. Garcia
Date
:
10 Jun 11 (Deposition) - 31 Aug 11 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Type I Interferon Signaling Complex, Extracellular Space, Immune System Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Thomas, I. Moraga, D. Levin, P. O. Krutzik, Y. Podoplelova, A. Trejo C. Lee, G. Yarden, S. E. Vleck, J. S. Glenn, G. P. Nolan, J. Piehler, G. Schreiber, K. C. Garcia
Structural Linkage Between Ligand Discrimination And Receptor Activation By Type I Interferons.
Cell(Cambridge, Mass. ) V. 146 621 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:145
BINDING SITE FOR RESIDUE NAG A 410
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_004012 (R23R, chain B, )
2: VAR_013001 (H34R, chain B, )
3: VAR_002717 (V141L, chain A, )
4: VAR_036329 (S154L, chain B, )
5: VAR_020523 (I169V, chain C, )
6: VAR_020502 (V280I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_004012
K
46
R
IFNA2_HUMAN
Polymorphism
1061959
B
R
23
R
2
UniProt
VAR_013001
H
57
R
IFNA2_HUMAN
Unclassified
---
B
H
34
R
3
UniProt
VAR_002717
V
168
L
INAR1_HUMAN
Polymorphism
2257167
A
V
141
L
4
UniProt
VAR_036329
S
177
L
IFNA2_HUMAN
Unclassified
---
B
S
154
L
5
UniProt
VAR_020523
I
196
V
INAR2_HUMAN
Polymorphism
17860223
C
I
169
V
6
UniProt
VAR_020502
V
307
I
INAR1_HUMAN
Polymorphism
17875833
A
V
280
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|A:100-200|A:204-302|-)
2: INTERFERON_A_B_D (B:122-140)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
INAR1_HUMAN
32-126
127-227
231-329
331-432
2
-
A:100-200
A:204-302
-
2
INTERFERON_A_B_D
PS00252
Interferon alpha, beta and delta family signature.
IFNA2_HUMAN
145-163
1
B:122-140
[
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Exons
(4, 4)
Info
All Exons
Exon 1.5 (C:11-47)
Exon 1.7b (C:47-105)
Exon 1.8a (C:105-153 (gaps))
Exon 1.10 (C:154-204 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.7b
3: Boundary 1.7b/1.8a
4: Boundary 1.8a/1.10
5: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000342136
1d
ENSE00001384199
chr21:
34602279-34602521
243
INAR2_HUMAN
-
0
0
-
-
1.3a
ENST00000342136
3a
ENSE00001366893
chr21:
34614145-34614282
138
INAR2_HUMAN
1-19
19
0
-
-
1.4
ENST00000342136
4
ENSE00001043262
chr21:
34615978-34616019
42
INAR2_HUMAN
19-33
15
0
-
-
1.5
ENST00000342136
5
ENSE00001784597
chr21:
34617256-34617379
124
INAR2_HUMAN
33-74
42
1
C:11-47
37
1.7b
ENST00000342136
7b
ENSE00001733110
chr21:
34619023-34619195
173
INAR2_HUMAN
74-132
59
1
C:47-105
59
1.8a
ENST00000342136
8a
ENSE00002144798
chr21:
34621014-34621159
146
INAR2_HUMAN
132-180
49
1
C:105-153 (gaps)
49
1.10
ENST00000342136
10
ENSE00002186976
chr21:
34624967-34625135
169
INAR2_HUMAN
181-237
57
1
C:154-204 (gaps)
51
1.11
ENST00000342136
11
ENSE00001781920
chr21:
34632902-34633032
131
INAR2_HUMAN
237-280
44
0
-
-
1.12g
ENST00000342136
12g
ENSE00001764722
chr21:
34635098-34636830
1733
INAR2_HUMAN
281-515
235
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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