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3SCL
Asym. Unit
Info
Asym.Unit (505 KB)
Biol.Unit 1 (251 KB)
Biol.Unit 2 (250 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPIKE PROTEIN RECEPTOR-BINDING DOMAIN FROM SARS CORONAVIRUS EPIDEMIC STRAIN COMPLEXED WITH HUMAN-CIVET CHIMERIC RECEPTOR ACE2
Authors
:
K. Wu, G. Peng, M. Wilken, R. Geraghty, F. Li
Date
:
07 Jun 11 (Deposition) - 08 Feb 12 (Release) - 08 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Keywords
:
Beta-Sheet, Hydrolase-Viral Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Wu, G. Peng, M. Wilken, R. Geraghty, F. Li
Sars Coronavirus: Mechanism Of Host Receptor Adaptation And Rational Prediction Of Future Evolution
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
ZN
2
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:374 , GLU A:375 , HIS A:378 , GLU A:402
BINDING SITE FOR RESIDUE ZN A 901
2
AC2
SOFTWARE
ARG A:169 , TRP A:477
BINDING SITE FOR RESIDUE CL A 902
3
AC3
SOFTWARE
HIS B:374 , GLU B:375 , HIS B:378 , GLU B:402
BINDING SITE FOR RESIDUE ZN B 901
4
AC4
SOFTWARE
ARG B:169 , TRP B:477
BINDING SITE FOR RESIDUE CL B 902
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SAPs(SNPs)/Variants
(10, 20)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_023082 (K26R, chain A/B, )
02: VAR_SPIKE_CVHSA_014 (K344R, chain E/F, )
03: VAR_SPIKE_CVHSA_015 (F360S, chain E/F, )
04: VAR_SPIKE_CVHSA_016 (R426G, chain E/F, )
05: VAR_SPIKE_CVHSA_017 (N437D, chain E/F, )
06: VAR_SPIKE_CVHSA_018 (L472P, chain E/F, )
07: VAR_SPIKE_CVHSA_019 (N479K, chain E/F, )
08: VAR_SPIKE_CVHSA_020 (D480G, chain E/F, )
09: VAR_SPIKE_CVHSA_021 (T487S, chain E/F, )
10: VAR_SPIKE_CVHSA_022 (F501Y, chain E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023082
K
26
R
ACE2_HUMAN
Polymorphism
4646116
A/B
K
26
R
02
UniProt
VAR_SPIKE_CVHSA_014
*
K
344
R
SPIKE_CVHSA
---
---
E/F
K
344
R
03
UniProt
VAR_SPIKE_CVHSA_015
*
F
360
S
SPIKE_CVHSA
---
---
E/F
F
360
S
04
UniProt
VAR_SPIKE_CVHSA_016
*
R
426
G
SPIKE_CVHSA
---
---
E/F
R
426
G
05
UniProt
VAR_SPIKE_CVHSA_017
*
N
437
D
SPIKE_CVHSA
---
---
E/F
N
437
D
06
UniProt
VAR_SPIKE_CVHSA_018
*
L
472
P
SPIKE_CVHSA
---
---
E/F
L
472
P
07
UniProt
VAR_SPIKE_CVHSA_019
*
N
479
K
SPIKE_CVHSA
---
---
E/F
N
479
K
08
UniProt
VAR_SPIKE_CVHSA_020
*
D
480
G
SPIKE_CVHSA
---
---
E/F
D
480
G
09
UniProt
VAR_SPIKE_CVHSA_021
*
T
487
S
SPIKE_CVHSA
---
---
E/F
T
487
S
10
UniProt
VAR_SPIKE_CVHSA_022
*
F
501
Y
SPIKE_CVHSA
---
---
E/F
F
501
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:371-380,B:371-380,A:371-380,B:37...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ACE2_HUMAN
371-380
2
A:371-380
B:371-380
ACE2_PAGLA
371-380
2
A:371-380
B:371-380
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3scle_ (E:)
1b: SCOP_d3sclf_ (F:)
2a: SCOP_d3scla_ (A:)
2b: SCOP_d3sclb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SARS receptor-binding domain-like
(12)
Superfamily
:
SARS receptor-binding domain-like
(12)
Family
:
SARS receptor-binding domain-like
(12)
Protein domain
:
automated matches
(4)
SARS coronavirus [TaxId: 227859]
(4)
1a
d3scle_
E:
1b
d3sclf_
F:
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Neurolysin-like
(55)
Protein domain
:
Angiotensin converting enzyme 2, ACE2
(10)
Paguma larvata
(5)
2a
d3scla_
A:
2b
d3sclb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (505 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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