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Getting 'Biological Unit' information from database.
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3S9M
Biol. Unit 2
Info
Asym.Unit (328 KB)
Biol.Unit 1 (325 KB)
Biol.Unit 2 (306 KB)
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(1)
Title
:
COMPLEX BETWEEN TRANSFERRIN RECEPTOR 1 AND TRANSFERRIN WITH IRON IN THE N-LOBE, CRYOCOOLED 1
Authors
:
B. E. Eckenroth, A. N. Steere, A. B. Mason, S. J. Everse
Date
:
01 Jun 11 (Deposition) - 10 Aug 11 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.32
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (2x)
Biol. Unit 2: B,D (2x)
Keywords
:
Transferrin Receptor Complex, Transferrin Superfamily, Carboxypeptidase Like, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. E. Eckenroth, A. N. Steere, N. D. Chasteen, S. J. Everse, A. B. Mason
How The Binding Of Human Transferrin Primes The Transferrin Receptor Potentiating Iron Release At Endosomal Ph.
Proc. Natl. Acad. Sci. Usa V. 108 13089 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CO3
2
Ligand/Ion
CARBONATE ION
3
FE
-1
Ligand/Ion
FE (III) ION
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ASN B:317 , GLU B:383 , TRP B:641
BINDING SITE FOR RESIDUE NAG B 903
2
AC4
SOFTWARE
THR B:310 , PHE B:313 , GLU B:465 , GLU B:468
BINDING SITE FOR RESIDUE CA B 900
3
AC7
SOFTWARE
ASP D:63 , THR D:120 , ARG D:124 , SER D:125 , ALA D:126 , TYR D:188 , HIS D:249 , FE D:901
BINDING SITE FOR RESIDUE CO3 D 905
4
AC8
SOFTWARE
ASP D:63 , TYR D:188 , HIS D:249 , CO3 D:905
BINDING SITE FOR RESIDUE FE D 901
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SAPs(SNPs)/Variants
(16, 32)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_034569 (R23L, chain D, )
02: VAR_029280 (S36R, chain D, )
03: VAR_034570 (A57V, chain D, )
04: VAR_038810 (D58N, chain D, )
05: VAR_011997 (G123S, chain D, )
06: VAR_012737 (S142S, chain B, )
07: VAR_051806 (L212V, chain B, )
08: VAR_011998 (G258S, chain D, )
09: VAR_007544 (D277G, chain D, )
10: VAR_007545 (H300R, chain D, )
11: VAR_011999 (W358C, chain D, )
12: VAR_051807 (G420S, chain B, )
13: VAR_012001 (T626P, chain D, )
14: VAR_012998 (K627E, chain D, )
15: VAR_012999 (G652E, chain D, )
16: VAR_051808 (R677H, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_034569
R
42
L
TRFE_HUMAN
Polymorphism
41298293
D
R
23
L
02
UniProt
VAR_029280
S
55
R
TRFE_HUMAN
Polymorphism
8177318
D
S
36
R
03
UniProt
VAR_034570
A
76
V
TRFE_HUMAN
Polymorphism
41298977
D
A
57
V
04
UniProt
VAR_038810
D
77
N
TRFE_HUMAN
Disease (ATRAF)
---
D
D
58
N
05
UniProt
VAR_011997
G
142
S
TRFE_HUMAN
Polymorphism
1799830
D
G
123
S
06
UniProt
VAR_012737
G
142
S
TFR1_HUMAN
Polymorphism
3817672
B
S
142
S
07
UniProt
VAR_051806
L
212
V
TFR1_HUMAN
Polymorphism
41301381
B
L
212
V
08
UniProt
VAR_011998
G
277
S
TRFE_HUMAN
Polymorphism
1799899
D
G
258
S
09
UniProt
VAR_007544
D
296
G
TRFE_HUMAN
Polymorphism
8177238
D
D
277
G
10
UniProt
VAR_007545
H
319
R
TRFE_HUMAN
Polymorphism
41295774
D
H
300
R
11
UniProt
VAR_011999
W
377
C
TRFE_HUMAN
Polymorphism
1804498
D
W
358
C
12
UniProt
VAR_051807
G
420
S
TFR1_HUMAN
Polymorphism
41295879
B
G
420
S
13
UniProt
VAR_012001
T
645
P
TRFE_HUMAN
Polymorphism
1130537
D
T
626
P
14
UniProt
VAR_012998
K
646
E
TRFE_HUMAN
Polymorphism
---
D
K
627
E
15
UniProt
VAR_012999
G
671
E
TRFE_HUMAN
Polymorphism
121918677
D
G
652
E
16
UniProt
VAR_051808
R
677
H
TFR1_HUMAN
Polymorphism
41298067
B
R
677
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: TRANSFERRIN_LIKE_4 (D:342-664)
2: TRANSFERRIN_LIKE_1 (D:95-97)
3: TRANSFERRIN_LIKE_2 (D:188-204|-)
4: TRANSFERRIN_LIKE_3 (D:583-588)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFE_HUMAN
25-347
361-683
4
-
D:6-328
-
D:342-664
2
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFE_HUMAN
114-123
2
-
D:95-97
3
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFE_HUMAN
207-223
536-551
2
-
D:188-204
-
4
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFE_HUMAN
241-271
577-607
4
-
D:222-252
-
D:583-588
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (328 KB)
Header - Asym.Unit
Biol.Unit 1 (325 KB)
Header - Biol.Unit 1
Biol.Unit 2 (306 KB)
Header - Biol.Unit 2
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