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3S8K
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PAPAYA LATEX SERINE PROTEASE INHIBITOR (PPI) AT 1.7A RESOLUTION
Authors
:
A. Garcia-Pino
Date
:
29 May 11 (Deposition) - 02 Nov 11 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Kunitz-Sti Fold, Protease Inhibitor, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Azarkan, S. Martinez-Rodriguez, L. Buts, D. Baeyens-Volant, A. Garcia-Pino
The Plasticity Of The Beta-Trefoil Fold Constitutes An Evolutionary Platform For Protease Inhibition
J. Biol. Chem. V. 286 43726 2011
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Hetero Components
(6, 22)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: AMMONIUM ION (NH4a)
5b: AMMONIUM ION (NH4b)
5c: AMMONIUM ION (NH4c)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CO
2
Ligand/Ion
COBALT (II) ION
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
GOL
4
Ligand/Ion
GLYCEROL
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NH4
3
Ligand/Ion
AMMONIUM ION
6
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:117 , HOH A:215 , HOH A:216 , GLU B:113 , HIS B:117
BINDING SITE FOR RESIDUE CO A 185
02
AC2
SOFTWARE
ASP A:52 , ASP A:55 , HOH A:352 , ASP B:52 , ASP B:55
BINDING SITE FOR RESIDUE CO A 186
03
AC3
SOFTWARE
TYR B:37 , GLY B:38 , HOH B:343 , HOH B:344
BINDING SITE FOR RESIDUE NH4 B 185
04
AC4
SOFTWARE
GLY A:118 , PHE A:119 , GLU A:120 , HOH A:267 , HOH A:281
BINDING SITE FOR RESIDUE NH4 A 187
05
AC5
SOFTWARE
GLY A:38 , HOH A:212 , HOH A:325 , HOH A:377
BINDING SITE FOR RESIDUE NH4 A 188
06
AC6
SOFTWARE
GLU A:75 , SER A:76 , LYS A:129 , LYS A:130
BINDING SITE FOR RESIDUE GOL A 189
07
AC7
SOFTWARE
LYS A:138 , ASN A:155 , ASN A:172
BINDING SITE FOR RESIDUE GOL A 190
08
AC8
SOFTWARE
LYS B:66 , SER B:144 , TYR B:145 , HOH B:261 , HOH B:323
BINDING SITE FOR RESIDUE GOL B 186
09
AC9
SOFTWARE
TYR A:163 , HOH A:355 , HOH A:385 , PHE B:160 , ARG B:164 , ARG B:166 , HOH B:262
BINDING SITE FOR RESIDUE GOL B 187
10
BC1
SOFTWARE
GLY B:17 , ASP B:19 , ASN B:84 , NAG B:189 , FUC B:190 , HOH B:233
BINDING SITE FOR RESIDUE NAG B 188
11
BC2
SOFTWARE
NAG B:188 , HOH B:257
BINDING SITE FOR RESIDUE NAG B 189
12
BC3
SOFTWARE
NAG B:188
BINDING SITE FOR RESIDUE FUC B 190
13
BC4
SOFTWARE
GLY A:17 , ASP A:19 , ASN A:84 , NAG A:202 , FUC A:203 , HOH A:219
BINDING SITE FOR RESIDUE NAG A 201
14
BC5
SOFTWARE
NAG A:201 , FUC A:203
BINDING SITE FOR RESIDUE NAG A 202
15
BC6
SOFTWARE
ASN A:183 , NAG A:201 , NAG A:202
BINDING SITE FOR RESIDUE FUC A 203
16
BC7
SOFTWARE
LYS A:66 , ASN A:67 , ARG B:147 , ARG B:149
BINDING SITE FOR RESIDUE SO4 A 191
17
BC8
SOFTWARE
ARG A:99 , ILE A:104 , GLY A:105 , HOH A:227 , ALA B:2 , ARG B:74
BINDING SITE FOR RESIDUE SO4 A 192
18
BC9
SOFTWARE
LYS B:44 , CYS B:45 , HOH B:305 , HOH B:365
BINDING SITE FOR RESIDUE SO4 B 191
19
CC1
SOFTWARE
LYS A:43 , LYS A:44 , CYS A:45
BINDING SITE FOR RESIDUE SO4 A 193
20
CC2
SOFTWARE
ARG B:99 , TRP B:106 , PRO B:152
BINDING SITE FOR RESIDUE SO4 B 192
21
CC3
SOFTWARE
SER A:76 , LYS A:127 , LYS A:129 , HIS A:140 , CYS A:142 , HOH A:248 , HOH A:318 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 194
22
CC4
SOFTWARE
THR A:148 , ARG A:149
BINDING SITE FOR RESIDUE SO4 A 195
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SOYBEAN_KUNITZ (A:6-22,B:6-22)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOYBEAN_KUNITZ
PS00283
Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature.
LSPI_CARPA
6-22
2
A:6-22
B:6-22
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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