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3S82
Asym. Unit
Info
Asym.Unit (249 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (483 KB)
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(1)
Title
:
STRUCTURE OF A S-ADENOSYLMETHIONINE SYNTHETASE FROM MYCOBACTERIUM AVIUM
Authors
:
Seattle Structural Genomics Center For Infectious Disease, Se Structural Genomics Center For Infectious Disease (Ssgcid)
Date
:
27 May 11 (Deposition) - 08 Jun 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Seattle Structural Genomics Center For Infectious Disease, Ssgcid, S- Adenosylmethionine Synthetase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 1,2-ETHANEDIOL (EDOa)
3a: GLYCEROL (GOLa)
4a: UNKNOWN LIGAND (UNLa)
4b: UNKNOWN LIGAND (UNLb)
View:
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No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
UNL
2
Ligand/Ion
UNKNOWN LIGAND
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:309 , LYS A:400 , HOH A:509 , HOH A:969 , ASN B:225 , ASN B:229 , HOH B:467
BINDING SITE FOR RESIDUE EDO B 404
2
AC2
SOFTWARE
ASP A:234 , HOH A:1647 , HOH A:1651 , HOH A:1792 , GLU B:187 , GLU B:189
BINDING SITE FOR RESIDUE CA A 404
3
AC3
SOFTWARE
ASN A:394 , ASP A:397 , ASP A:398 , HOH A:696 , HOH A:741 , HOH A:848 , HOH A:1140 , HOH B:463
BINDING SITE FOR RESIDUE CA A 405
4
AC4
SOFTWARE
HOH A:1659 , ASN B:394 , ASP B:397 , ASP B:398 , HOH B:1744 , HOH B:1773 , HOH B:1774
BINDING SITE FOR RESIDUE CA B 405
5
AC5
SOFTWARE
ARG A:401 , ARG B:401 , HOH B:1803 , HOH B:1804
BINDING SITE FOR RESIDUE CA B 406
6
AC6
SOFTWARE
PHE A:188 , ASP A:191 , ARG A:314 , HOH A:477 , HOH B:1666
BINDING SITE FOR RESIDUE GOL A 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ADOMET_SYNTHASE_1 (A:133-141,B:133-141)
2: ADOMET_SYNTHASE_2 (A:279-287,B:279-287)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADOMET_SYNTHASE_1
PS00376
S-adenosylmethionine synthase signature 1.
METK_MYCA1
131-141
2
A:133-141
B:133-141
2
ADOMET_SYNTHASE_2
PS00377
S-adenosylmethionine synthase signature 2.
METK_MYCA1
279-287
2
A:279-287
B:279-287
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3s82a1 (A:5-106)
1b: SCOP_d3s82a2 (A:133-252)
1c: SCOP_d3s82a3 (A:253-403)
1d: SCOP_d3s82b1 (B:2-106)
1e: SCOP_d3s82b2 (B:133-252)
1f: SCOP_d3s82b3 (B:253-403)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
S-adenosylmethionine synthetase
(23)
Superfamily
:
S-adenosylmethionine synthetase
(23)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Mycobacterium avium [TaxId: 243243]
(1)
1a
d3s82a1
A:5-106
1b
d3s82a2
A:133-252
1c
d3s82a3
A:253-403
1d
d3s82b1
B:2-106
1e
d3s82b2
B:133-252
1f
d3s82b3
B:253-403
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_S_AdoMet_synt_C_3s82B01 (B:253-392)
1b: PFAM_S_AdoMet_synt_C_3s82B02 (B:253-392)
2a: PFAM_S_AdoMet_synt_M_3s82B03 (B:133-251)
2b: PFAM_S_AdoMet_synt_M_3s82B04 (B:133-251)
3a: PFAM_S_AdoMet_synt_N_3s82B05 (B:4-106)
3b: PFAM_S_AdoMet_synt_N_3s82B06 (B:4-106)
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Clan
:
no clan defined [family: S-AdoMet_synt_C]
(16)
Family
:
S-AdoMet_synt_C
(16)
Mycobacterium avium (strain 104)
(1)
1a
S-AdoMet_synt_C-3s82B01
B:253-392
1b
S-AdoMet_synt_C-3s82B02
B:253-392
Clan
:
no clan defined [family: S-AdoMet_synt_M]
(16)
Family
:
S-AdoMet_synt_M
(16)
Mycobacterium avium (strain 104)
(1)
2a
S-AdoMet_synt_M-3s82B03
B:133-251
2b
S-AdoMet_synt_M-3s82B04
B:133-251
Clan
:
no clan defined [family: S-AdoMet_synt_N]
(16)
Family
:
S-AdoMet_synt_N
(16)
Mycobacterium avium (strain 104)
(1)
3a
S-AdoMet_synt_N-3s82B05
B:4-106
3b
S-AdoMet_synt_N-3s82B06
B:4-106
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Show PDB file:
Asym.Unit (249 KB)
Header - Asym.Unit
Biol.Unit 1 (243 KB)
Header - Biol.Unit 1
Biol.Unit 2 (483 KB)
Header - Biol.Unit 2
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