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3S70
Asym. Unit
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Asym.Unit (190 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACTIVE CASPASE-6 BOUND WITH AC-VEID-CHO SOLVED BY AS-SAD
Authors
:
X. -D. Su, X. Liu, X. -J. Wang
Date
:
26 May 11 (Deposition) - 11 Apr 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Caspase-6, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Liu, H. Zhang, X. -J. Wang, L. -F. Li, X. -D. Su
Get Phases From Arsenic Anomalous Scattering: De Novo Sad Phasing Of Two Protein Structures Crystallized In Cacodylat Buffer
Plos One V. 6 24227 2011
[
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: ACETATE ION (ACTa)
3a: ASPARTIC ALDEHYDE (ASAa)
3b: ASPARTIC ALDEHYDE (ASAb)
4a: CACODYLATE ION (CACa)
4b: CACODYLATE ION (CACb)
4c: CACODYLATE ION (CACc)
4d: CACODYLATE ION (CACd)
4e: CACODYLATE ION (CACe)
4f: CACODYLATE ION (CACf)
4g: CACODYLATE ION (CACg)
4h: CACODYLATE ION (CACh)
5a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
ACT
1
Ligand/Ion
ACETATE ION
3
ASA
2
Mod. Amino Acid
ASPARTIC ALDEHYDE
4
CAC
8
Ligand/Ion
CACODYLATE ION
5
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:264 , VAL B:1
BINDING SITE FOR RESIDUE CAC A 2
02
AC2
SOFTWARE
ARG A:164 , TYR A:210 , GLU A:214 , CYS A:277 , ALA A:279 , HOH A:464 , ALA C:279
BINDING SITE FOR RESIDUE CAC A 3
03
AC3
SOFTWARE
THR A:75 , VAL A:85 , CYS A:87 , CAC C:5
BINDING SITE FOR RESIDUE CAC A 6
04
AC4
SOFTWARE
ASN A:51 , CYS A:68 , ARG A:71 , ASN A:89 , GLU C:53 , ARG C:54 , ASP C:90
BINDING SITE FOR RESIDUE CAC A 7
05
AC5
SOFTWARE
ARG A:71 , GLU C:53 , ARG C:65 , GLY C:66 , HOH C:312 , HOH C:369 , HOH C:395
BINDING SITE FOR RESIDUE ACT A 1
06
AC6
SOFTWARE
ARG A:260 , HOH A:368 , ARG C:260
BINDING SITE FOR RESIDUE MG A 302
07
AC7
SOFTWARE
ALA A:279 , ARG C:164 , TYR C:210 , GLU C:214 , CYS C:277 , ALA C:279 , HOH C:410
BINDING SITE FOR RESIDUE CAC C 1
08
AC8
SOFTWARE
CYS C:264 , VAL D:1
BINDING SITE FOR RESIDUE CAC C 4
09
AC9
SOFTWARE
CAC A:6 , ASP A:72 , CYS C:68 , ALA C:69 , ASP C:72
BINDING SITE FOR RESIDUE CAC C 5
10
BC1
SOFTWARE
THR C:75 , VAL C:85 , CYS C:87
BINDING SITE FOR RESIDUE CAC C 8
11
BC2
SOFTWARE
CAC A:2 , ARG A:64 , HIS A:121 , GLN A:161 , CYS A:163 , TYR A:217 , SER A:218 , HIS A:219 , ARG A:220 , GLU A:221 , THR A:222 , HOH A:407 , HOH A:536 , HOH B:172 , HOH B:203 , HOH B:469 , HOH B:520 , HOH B:611 , HOH B:627
BINDING SITE FOR CHAIN B OF ALDEHYDE INHIBITOR AC-VEID-CHO
12
BC3
SOFTWARE
CAC C:4 , ARG C:64 , HIS C:121 , GLY C:122 , GLN C:161 , CYS C:163 , TYR C:217 , SER C:218 , HIS C:219 , ARG C:220 , GLU C:221 , THR C:222 , HOH D:109 , HOH D:156 , HOH D:194 , HOH D:305 , HOH D:375 , HOH D:495 , HOH D:534 , HOH D:598 , HOH D:675 , HOH D:677
BINDING SITE FOR CHAIN D OF ALDEHYDE INHIBITOR AC-VEID-CHO
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029242 (E35K, chain A/C, )
2: VAR_016130 (A109T, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029242
E
35
K
CASP6_HUMAN
Polymorphism
11574697
A/C
E
35
K
2
UniProt
VAR_016130
A
109
T
CASP6_HUMAN
Polymorphism
5030674
A/C
A
109
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:43-167,C:43-167)
2: CASPASE_HIS (A:108-122,C:108-122)
3: CASPASE_CYS (A:154-165,C:154-165)
4: CASPASE_P10 (A:197-290,C:198-290)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP6_HUMAN
43-167
2
A:43-167
C:43-167
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP6_HUMAN
108-122
2
A:108-122
C:108-122
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP6_HUMAN
154-165
2
A:154-165
C:154-165
4
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP6_HUMAN
196-290
2
A:197-290
C:198-290
[
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Exons
(5, 10)
Info
All Exons
Exon 1.4b (A:31-77 | C:31-77)
Exon 1.5b (A:77-103 | C:77-103)
Exon 1.6c (A:103-161 | C:103-161)
Exon 1.7c (A:162-215 (gaps) | C:162-215 (gaps...)
Exon 1.8d (A:215-292 | C:215-291)
View:
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Label:
All Exon Boundaries
1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5b
3: Boundary 1.5b/1.6c
4: Boundary 1.6c/1.7c
5: Boundary 1.7c/1.8d
6: Boundary 1.8d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000265164
1b
ENSE00001018825
chr4:
110624629-110624512
118
CASP6_HUMAN
1-14
14
0
-
-
1.3
ENST00000265164
3
ENSE00000935048
chr4:
110619498-110619456
43
CASP6_HUMAN
14-28
15
0
-
-
1.4b
ENST00000265164
4b
ENSE00000935047
chr4:
110618924-110618778
147
CASP6_HUMAN
28-77
50
2
A:31-77
C:31-77
47
47
1.5b
ENST00000265164
5b
ENSE00000935046
chr4:
110617642-110617566
77
CASP6_HUMAN
77-103
27
2
A:77-103
C:77-103
27
27
1.6c
ENST00000265164
6c
ENSE00000935045
chr4:
110615856-110615681
176
CASP6_HUMAN
103-161
59
2
A:103-161
C:103-161
59
59
1.7c
ENST00000265164
7c
ENSE00000935044
chr4:
110612165-110612006
160
CASP6_HUMAN
162-215
54
2
A:162-215 (gaps)
C:162-215 (gaps)
54
54
1.8d
ENST00000265164
8d
ENSE00001820381
chr4:
110610724-110609898
827
CASP6_HUMAN
215-293
79
2
A:215-292
C:215-291
78
77
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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