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3S4F
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF BOVINE LACTOPEROXIDASE WITH 1H-PYRAZOLO[4,3-C] PYRIDINE AT 1.99 A RESOLUTION
Authors
:
A. Singh, A. K. Singh, R. P. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Sing
Date
:
19 May 11 (Deposition) - 08 Jun 11 (Release) - 08 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Peroxidase, Iron Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Singh, A. K. Singh, R. P. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Bovine Lactoperoxidase With 1H-Pyrazolo[4, 3-C] Pyridine At 1. 99 A Resolution
To Be Published
[
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Hetero Components
(9, 29)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: GLYCEROL (GOLa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: IODIDE ION (IODa)
4b: IODIDE ION (IODb)
4c: IODIDE ION (IODc)
4d: IODIDE ION (IODd)
4e: IODIDE ION (IODe)
4f: IODIDE ION (IODf)
4g: IODIDE ION (IODg)
4h: IODIDE ION (IODh)
4i: IODIDE ION (IODi)
4j: IODIDE ION (IODj)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
6b: DI(HYDROXYETHYL)ETHER (PEGb)
6c: DI(HYDROXYETHYL)ETHER (PEGc)
6d: DI(HYDROXYETHYL)ETHER (PEGd)
6e: DI(HYDROXYETHYL)ETHER (PEGe)
6f: DI(HYDROXYETHYL)ETHER (PEGf)
6g: DI(HYDROXYETHYL)ETHER (PEGg)
7a: 1H-PYRAZOLO[4,3-C]PYRIDINE (PZRa)
8a: THIOCYANATE ION (SCNa)
9a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
IOD
10
Ligand/Ion
IODIDE ION
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
7
PZR
1
Ligand/Ion
1H-PYRAZOLO[4,3-C]PYRIDINE
8
SCN
1
Ligand/Ion
THIOCYANATE ION
9
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , ARG A:255 , GLU A:258 , GLN A:259 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , GLN A:423 , LEU A:433 , ILE A:436 , ARG A:440 , PZR A:608 , HOH A:623 , HOH A:892 , HOH A:1019
BINDING SITE FOR RESIDUE HEM A 605
02
AC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 606
03
AC3
SOFTWARE
ASN A:80
BINDING SITE FOR RESIDUE IOD A 596
04
AC4
SOFTWARE
HOH A:941
BINDING SITE FOR RESIDUE IOD A 597
05
AC5
SOFTWARE
GLN A:217 , PHE A:229
BINDING SITE FOR RESIDUE IOD A 598
06
AC6
SOFTWARE
TRP A:46 , VAL A:342 , TRP A:452
BINDING SITE FOR RESIDUE IOD A 599
07
AC7
SOFTWARE
ARG A:397 , THR A:560
BINDING SITE FOR RESIDUE IOD A 601
08
AC8
SOFTWARE
ARG A:96
BINDING SITE FOR RESIDUE IOD A 603
09
AC9
SOFTWARE
LYS A:462 , PEG A:620
BINDING SITE FOR RESIDUE IOD A 604
10
BC1
SOFTWARE
ALA A:225 , HOH A:813
BINDING SITE FOR RESIDUE IOD A 607
11
BC2
SOFTWARE
HIS A:109 , ARG A:255 , GLU A:258 , PHE A:381 , HEM A:605 , HOH A:623 , HOH A:1019 , HOH A:1053
BINDING SITE FOR RESIDUE PZR A 608
12
BC3
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , NAG A:610 , HOH A:907
BINDING SITE FOR RESIDUE NAG A 609
13
BC4
SOFTWARE
NAG A:609 , HOH A:864
BINDING SITE FOR RESIDUE NAG A 610
14
BC5
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217 , NAG A:612 , HOH A:713 , HOH A:778
BINDING SITE FOR RESIDUE NAG A 611
15
BC6
SOFTWARE
NAG A:611 , HOH A:873
BINDING SITE FOR RESIDUE NAG A 612
16
BC7
SOFTWARE
ASN A:332 , SER A:334 , VAL A:335
BINDING SITE FOR RESIDUE NAG A 613
17
BC8
SOFTWARE
ASN A:95 , PRO A:209 , ILE A:315 , GLN A:568
BINDING SITE FOR RESIDUE NAG A 614
18
BC9
SOFTWARE
ASN A:230
BINDING SITE FOR RESIDUE SCN A 6788
19
CC1
SOFTWARE
ARG A:76 , ASN A:80 , PRO A:149 , LYS A:150 , ARG A:418 , ASN A:419 , HOH A:899
BINDING SITE FOR RESIDUE PEG A 615
20
CC2
SOFTWARE
LEU A:36 , ASN A:333 , ARG A:338 , HOH A:945
BINDING SITE FOR RESIDUE PEG A 616
21
CC3
SOFTWARE
ARG A:245 , ILE A:387 , LYS A:388
BINDING SITE FOR RESIDUE PEG A 617
22
CC4
SOFTWARE
TRP A:220
BINDING SITE FOR RESIDUE PEG A 618
23
CC5
SOFTWARE
PRO A:197 , SER A:201 , LYS A:472 , PEG A:621 , HOH A:927
BINDING SITE FOR RESIDUE PEG A 619
24
CC6
SOFTWARE
LEU A:12 , SER A:459 , GLN A:460 , PRO A:461 , THR A:469 , VAL A:470 , IOD A:604
BINDING SITE FOR RESIDUE PEG A 620
25
CC7
SOFTWARE
LEU A:206 , LYS A:472 , PRO A:500 , MET A:501 , PEG A:619 , HOH A:942
BINDING SITE FOR RESIDUE PEG A 621
26
CC8
SOFTWARE
SEP A:198 , LEU A:199 , ARG A:202 , LYS A:474
BINDING SITE FOR RESIDUE GOL A 622
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:12-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PERL_BOVIN
129-711
1
A:12-594
[
close PROSITE info
]
Exons
(9, 9)
Info
All Exons
Exon 1.5 (A:1-31)
Exon 1.6 (A:31-74)
Exon 1.7 (A:75-143)
Exon 1.8 (A:144-252)
Exon 1.9 (A:252-305)
Exon 1.10 (A:306-390)
Exon 1.11 (A:390-448)
Exon 1.12 (A:448-527)
Exon 1.13 (A:527-595)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016986
1
ENSBTAE00000279445
chr19:
8430632-8430751
120
PERL_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000016986
2
ENSBTAE00000137885
chr19:
8435757-8435834
78
PERL_BOVIN
1-26
26
0
-
-
1.3
ENSBTAT00000016986
3
ENSBTAE00000137889
chr19:
8437178-8437265
88
PERL_BOVIN
26-55
30
0
-
-
1.4
ENSBTAT00000016986
4
ENSBTAE00000137892
chr19:
8441906-8442066
161
PERL_BOVIN
55-109
55
0
-
-
1.5
ENSBTAT00000016986
5
ENSBTAE00000137896
chr19:
8443636-8443753
118
PERL_BOVIN
109-148
40
1
A:1-31
31
1.6
ENSBTAT00000016986
6
ENSBTAE00000137903
chr19:
8444165-8444294
130
PERL_BOVIN
148-191
44
1
A:31-74
44
1.7
ENSBTAT00000016986
7
ENSBTAE00000137906
chr19:
8445032-8445238
207
PERL_BOVIN
192-260
69
1
A:75-143
69
1.8
ENSBTAT00000016986
8
ENSBTAE00000137912
chr19:
8446677-8447001
325
PERL_BOVIN
261-369
109
1
A:144-252
109
1.9
ENSBTAT00000016986
9
ENSBTAE00000137915
chr19:
8448604-8448764
161
PERL_BOVIN
369-422
54
1
A:252-305
54
1.10
ENSBTAT00000016986
10
ENSBTAE00000137918
chr19:
8457180-8457432
253
PERL_BOVIN
423-507
85
1
A:306-390
85
1.11
ENSBTAT00000016986
11
ENSBTAE00000137921
chr19:
8458505-8458678
174
PERL_BOVIN
507-565
59
1
A:390-448
59
1.12
ENSBTAT00000016986
12
ENSBTAE00000137923
chr19:
8459302-8459539
238
PERL_BOVIN
565-644
80
1
A:448-527
80
1.13
ENSBTAT00000016986
13
ENSBTAE00000279432
chr19:
8459727-8460382
656
PERL_BOVIN
644-712
69
1
A:527-595
69
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3s4fA01 (A:21-567)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Bos taurus (Bovine)
(11)
1a
An_peroxidase-3s4fA01
A:21-567
[
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Asymmetric Unit 1
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