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3S38
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (106 KB)
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(1)
Title
:
STRUCTURE OF THERMUS THERMOPHILUS CYTOCHROME BA3 OXIDASE 30S AFTER XE DEPRESSURIZATION
Authors
:
V. M. Luna, J. A. Fee, A. A. Deniz, C. D. Stout
Date
:
17 May 11 (Deposition) - 23 May 12 (Release) - 12 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Oxidoreductase, Xenon
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. M. Luna, J. A. Fee, A. A. Deniz, C. D. Stout
Mobility Of Xe Atoms Within The Oxygen Diffusion Channel Of Cytochrome Ba(3) Oxidase.
Biochemistry V. 51 4669 2012
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Hetero Components
(5, 8)
Info
All Hetero Components
2a: DINUCLEAR COPPER ION (CUAa)
1a: COPPER (II) ION (CUa)
3a: HEME-AS (HASa)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: XENON (XEa)
5b: XENON (XEb)
5c: XENON (XEc)
5d: XENON (XEd)
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No.
Name
Count
Type
Full Name
1
CU
1
Ligand/Ion
COPPER (II) ION
2
CUA
1
Ligand/Ion
DINUCLEAR COPPER ION
3
HAS
1
Ligand/Ion
HEME-AS
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
XE
4
Ligand/Ion
XENON
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:233 , HIS A:282 , HIS A:283
BINDING SITE FOR RESIDUE CU A 803
2
AC2
SOFTWARE
GLY A:39 , GLN A:42 , TYR A:46 , TYR A:65 , LEU A:69 , HIS A:72 , ASN A:76 , ALA A:77 , LEU A:132 , TYR A:133 , PHE A:385 , HIS A:386 , THR A:394 , MET A:432 , ARG A:449 , ARG A:450 , ALA A:451
BINDING SITE FOR RESIDUE HEM A 800
3
AC3
SOFTWARE
TYR A:133 , VAL A:236 , TYR A:237 , TRP A:239 , HIS A:282 , HIS A:283 , THR A:302 , SER A:309 , LEU A:310 , ALA A:313 , VAL A:350 , LEU A:353 , LEU A:354 , PHE A:356 , GLY A:360 , ASN A:366 , ALA A:367 , ASP A:372 , HIS A:376 , VAL A:381 , HIS A:384 , PHE A:385 , GLN A:388 , VAL A:389 , ARG A:449 , ARG A:450
BINDING SITE FOR RESIDUE HAS A 801
4
AC4
SOFTWARE
HIS B:114 , CYS B:149 , GLN B:151 , CYS B:153 , HIS B:157 , MET B:160
BINDING SITE FOR RESIDUE CUA B 802
5
AC5
SOFTWARE
ALA A:149
BINDING SITE FOR RESIDUE XE A 565
6
AC6
SOFTWARE
SER A:150
BINDING SITE FOR RESIDUE XE A 566
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: COX2_CUA (B:66-168)
2: COX2 (B:112-160)
3: COX1_CUB (A:229-283)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_THET8
66-168
1
B:66-168
2
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_THET8
112-160
1
B:112-160
3
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_THET8
229-283
1
A:229-283
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (114 KB)
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