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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3S2K
Asym. Unit
Info
Asym.Unit (450 KB)
Biol.Unit 1 (441 KB)
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(1)
Title
:
STRUCTURAL BASIS OF WNT SIGNALING INHIBITION BY DICKKOPF BINDING TO LRP5/6.
Authors
:
V. E. Ahn, M. L. -H. Chu, H. -J. Choi, D. Tran, A. Abo, W. I. Weis
Date
:
16 May 11 (Deposition) - 02 Nov 11 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Wnt Co-Receptor, Beta-Propeller, Egf Domain, Wnt Signaling, Wnt Inhibitor, Glycosylation, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. E. Ahn, M. L. Chu, H. J. Choi, D. Tran, A. Abo, W. I. Weis
Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp5/6.
Dev. Cell V. 21 862 2011
[
close entry info
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:692 , SER A:694 , NAG A:2693 , FUC A:2694
BINDING SITE FOR RESIDUE NAG A 2692
02
AC2
SOFTWARE
NAG A:2692 , FUC A:2694
BINDING SITE FOR RESIDUE NAG A 2693
03
AC3
SOFTWARE
ASN A:674 , ASN A:692 , NAG A:2692 , NAG A:2693
BINDING SITE FOR RESIDUE FUC A 2694
04
AC4
SOFTWARE
ASN A:859 , THR A:861 , SER A:862 , ASN A:865 , NAG A:2865
BINDING SITE FOR RESIDUE NAG A 2859
05
AC5
SOFTWARE
ASN A:865 , NAG A:2859
BINDING SITE FOR RESIDUE NAG A 2865
06
AC6
SOFTWARE
ALA A:924 , ASN A:926
BINDING SITE FOR RESIDUE NAG A 2926
07
AC7
SOFTWARE
ASN A:1039 , THR A:1041 , SER A:1047 , VAL A:1050 , NAG A:3040
BINDING SITE FOR RESIDUE NAG A 3039
08
AC8
SOFTWARE
NAG A:3039
BINDING SITE FOR RESIDUE NAG A 3040
09
AC9
SOFTWARE
ILE A:970 , ASP A:971 , LEU A:1019 , LEU A:1150 , ASP A:1190 , ILE A:1191 , HIS A:1192
BINDING SITE FOR RESIDUE GOL A 101
10
BC1
SOFTWARE
PHE B:690 , ASN B:692 , NAG B:2693 , FUC B:2694
BINDING SITE FOR RESIDUE NAG B 2692
11
BC2
SOFTWARE
NAG B:2692 , FUC B:2694
BINDING SITE FOR RESIDUE NAG B 2693
12
BC3
SOFTWARE
ASN B:674 , NAG B:2692 , NAG B:2693
BINDING SITE FOR RESIDUE FUC B 2694
13
BC4
SOFTWARE
ASP B:843 , ASN B:859 , THR B:861 , SER B:862 , NAG B:2865
BINDING SITE FOR RESIDUE NAG B 2859
14
BC5
SOFTWARE
ASN B:865 , NAG B:2859
BINDING SITE FOR RESIDUE NAG B 2865
15
BC6
SOFTWARE
ALA B:924 , ASN B:926
BINDING SITE FOR RESIDUE NAG B 2926
16
BC7
SOFTWARE
TRP B:1030 , ASN B:1039 , THR B:1041 , SER B:1047 , VAL B:1050 , NAG B:3040
BINDING SITE FOR RESIDUE NAG B 3039
17
BC8
SOFTWARE
GLY B:1045 , NAG B:3039
BINDING SITE FOR RESIDUE NAG B 3040
18
BC9
SOFTWARE
HIS A:1216 , HIS A:1233 , LEU A:1234 , ARG B:985
BINDING SITE FOR RESIDUE GOL B 102
[
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030350 (S817C, chain A/B, )
2: VAR_024520 (I1062I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030350
S
817
C
LRP6_HUMAN
Polymorphism
2302686
A/B
S
817
C
2
UniProt
VAR_024520
V
1062
I
LRP6_HUMAN
Polymorphism
2302685
A/B
I
1062
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 20)
Info
All PROSITE Patterns/Profiles
1: LDLRB (-|-|-|-|-|-|-|-|-|A:674-716,B:674-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LDLRB
PS51120
LDL-receptor class B (LDLRB) repeat profile.
LRP6_HUMAN
63-106
107-149
150-193
194-236
372-414
415-457
458-501
502-544
545-584
674-716
717-759
760-802
843-885
803-839
977-1025
1026-1068
1069-1113
1114-1156
1157-1198
20
-
-
-
-
-
-
-
-
-
A:674-716
B:674-716
A:717-759
B:717-759
A:760-802
B:760-802
A:843-885
B:843-885
A:803-839
B:803-839
A:977-1025
B:977-1025
A:1026-1068
B:1026-1068
A:1069-1113
B:1069-1113
A:1114-1156
B:1114-1156
A:1157-1198
B:1157-1198
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain C
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (450 KB)
Header - Asym.Unit
Biol.Unit 1 (441 KB)
Header - Biol.Unit 1
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