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3S1V
Biol. Unit 1
Info
Asym.Unit (389 KB)
Biol.Unit 1 (761 KB)
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(1)
Title
:
TRANSALDOLASE FROM THERMOPLASMA ACIDOPHILUM IN COMPLEX WITH D-FRUCTOSE 6-PHOSPHATE SCHIFF-BASE INTERMEDIATE
Authors
:
A. Lehwess-Litzmann, P. Neumann, C. Parthier, K. Tittmann
Date
:
16 May 11 (Deposition) - 24 Aug 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (2x)
Keywords
:
Alpha-Beta Barrel, Conformational Selection, Domain Swapping, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Lehwess-Litzmann, P. Neumann, C. Parthier, S. Ludtke, R. Golbik, R. Ficner, K. Tittmann
Twisted Schiff Base Intermediates And Substrate Locale Revise Transaldolase Mechanism.
Nat. Chem. Biol. V. 7 678 2011
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: FRUCTOSE -6-PHOSPHATE (F6Ra)
1b: FRUCTOSE -6-PHOSPHATE (F6Rb)
1c: FRUCTOSE -6-PHOSPHATE (F6Rc)
1d: FRUCTOSE -6-PHOSPHATE (F6Rd)
1e: FRUCTOSE -6-PHOSPHATE (F6Re)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
F6R
10
Ligand/Ion
FRUCTOSE -6-PHOSPHATE
2
GOL
6
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:240 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:246
BINDING SITE FOR RESIDUE GOL A 224
2
AC2
SOFTWARE
ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:253
BINDING SITE FOR RESIDUE GOL B 224
3
AC3
SOFTWARE
ARG A:176 , VAL A:179 , ILE A:180 , HOH A:692
BINDING SITE FOR RESIDUE GOL A 225
4
AC4
SOFTWARE
ASP C:6 , THR C:26 , THR C:27 , ASN C:28 , LYS C:86 , ASN C:108 , THR C:110 , SER C:130 , PHE C:132 , ARG C:135 , ALA C:166 , SER C:167 , HOH C:270 , HOH C:483 , HOH C:579 , HOH C:597
BINDING SITE FOR RESIDUE F6R C 224
5
AC5
SOFTWARE
ASP A:6 , THR A:26 , THR A:27 , ASN A:28 , LYS A:86 , ASN A:108 , THR A:110 , SER A:130 , PHE A:132 , ARG A:135 , ALA A:166 , SER A:167 , ARG A:169 , HOH A:245 , HOH A:247
BINDING SITE FOR RESIDUE F6R A 226
6
AC6
SOFTWARE
ASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , THR B:110 , SER B:130 , PHE B:132 , ARG B:135 , ALA B:166 , SER B:167 , ARG B:169 , HOH B:253 , HOH B:267 , HOH B:683
BINDING SITE FOR RESIDUE F6R B 225
7
AC7
SOFTWARE
ASP D:6 , THR D:27 , ASN D:28 , LYS D:86 , ASN D:108 , THR D:110 , SER D:130 , PHE D:132 , ARG D:135 , ALA D:166 , SER D:167 , ARG D:169 , HOH D:258 , HOH D:264 , HOH D:277
BINDING SITE FOR RESIDUE F6R D 224
8
AC8
SOFTWARE
ASP E:6 , THR E:27 , ASN E:28 , LYS E:86 , THR E:110 , SER E:130 , PHE E:132 , ARG E:135 , ALA E:166 , SER E:167 , ARG E:169 , HOH E:345 , HOH E:599 , HOH E:760
BINDING SITE FOR RESIDUE F6R E 224
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 20)
Info
All PROSITE Patterns/Profiles
1: TRANSALDOLASE_1 (A:24-32,B:24-32,C:24-32,D:24-32,E:...)
2: TRANSALDOLASE_2 (A:83-100,B:83-100,C:83-100,D:83-10...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSALDOLASE_1
PS01054
Transaldolase signature 1.
TAL_THEAC
24-32
10
A:24-32
B:24-32
C:24-32
D:24-32
E:24-32
2
TRANSALDOLASE_2
PS00958
Transaldolase active site.
TAL_THEAC
83-100
10
A:83-100
B:83-100
C:83-100
D:83-100
E:83-100
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3s1va_ (A:)
1b: SCOP_d3s1vb_ (B:)
1c: SCOP_d3s1vc_ (C:)
1d: SCOP_d3s1vd_ (D:)
1e: SCOP_d3s1ve_ (E:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
automated matches
(54)
Thermoplasma acidophilum [TaxId: 273075]
(5)
1a
d3s1va_
A:
1b
d3s1vb_
B:
1c
d3s1vc_
C:
1d
d3s1vd_
D:
1e
d3s1ve_
E:
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CATH Domains
(0, 0)
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Pfam Domains
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