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3S1F
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
ASP169GLU MUTANT OF MAIZE CYTOKININ OXIDASE/DEHYDROGENASE COMPLEXED WITH N6-ISOPENTENYLADENINE
Authors
:
D. Kopecny, P. Briozzo, S. Morera
Date
:
15 May 11 (Deposition) - 23 May 12 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Fad Binding Protein, Flavoprotein, Cytokinin Oxidase/Dehydrogenase, Cytokinin Binding, Glycosylation, Covalent Flavination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kopecny, R. Koncitikova, H. Popelka, P. Briozzo, A. Vigouroux, M. Kopecna, D. Zalabak, M. Sebela, J. Skopalova, I. Frebort, S. Morera
Kinetic And Structural Investigation Of The Cytokinin Oxidase/Dehydrogenase Active Site.
Febs J. V. 283 361 2016
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN... (ZIPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
8
Ligand/Ion
GLYCEROL
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
ZIP
1
Ligand/Ion
N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:61 , PHE A:100 , GLY A:102 , ARG A:103 , GLY A:104 , HIS A:105 , SER A:106 , GLN A:110 , ALA A:111 , THR A:168 , GLU A:169 , TYR A:170 , LEU A:173 , THR A:174 , GLY A:176 , GLY A:177 , SER A:180 , ASN A:181 , GLY A:183 , ILE A:184 , GLY A:230 , GLY A:233 , VAL A:234 , ILE A:235 , TRP A:391 , TRP A:397 , TYR A:491 , LEU A:492 , SER A:527 , GLN A:530 , ZIP A:536 , HOH A:734 , HOH A:748 , HOH A:787
BINDING SITE FOR RESIDUE FAD A 535
02
AC2
SOFTWARE
GLU A:169 , VAL A:378 , GLU A:381 , TRP A:397 , ASN A:399 , SER A:456 , LEU A:458 , FAD A:535 , GOL A:544 , GOL A:545 , HOH A:975
BINDING SITE FOR RESIDUE ZIP A 536
03
AC3
SOFTWARE
THR A:59 , ASN A:63 , ILE A:64 , HOH A:708 , HOH A:943
BINDING SITE FOR RESIDUE NAG A 602
04
AC4
SOFTWARE
PRO A:130 , PRO A:131 , ARG A:132 , ASN A:134 , ARG A:237
BINDING SITE FOR RESIDUE NAG A 603
05
AC5
SOFTWARE
ASN A:294 , GLN A:295 , ASN A:323 , NAG A:605
BINDING SITE FOR RESIDUE NAG A 604
06
AC6
SOFTWARE
NAG A:604
BINDING SITE FOR RESIDUE NAG A 605
07
AC7
SOFTWARE
ASN A:323 , HOH A:919 , HOH A:934 , HOH A:956
BINDING SITE FOR RESIDUE NAG A 606
08
AC8
SOFTWARE
THR A:49 , TYR A:96 , VAL A:117
BINDING SITE FOR RESIDUE PEG A 537
09
AC9
SOFTWARE
ASN A:181 , GLY A:227 , PHE A:401 , ALA A:444 , ALA A:445 , THR A:490 , HIS A:504 , HOH A:750
BINDING SITE FOR RESIDUE GOL A 538
10
BC1
SOFTWARE
LEU A:398 , ASN A:474 , LEU A:478 , ALA A:493 , HOH A:741 , HOH A:753 , HOH A:759 , HOH A:877
BINDING SITE FOR RESIDUE GOL A 539
11
BC2
SOFTWARE
PHE A:61 , ARG A:103 , GLY A:104 , HIS A:105 , GLU A:382 , TRP A:391
BINDING SITE FOR RESIDUE GOL A 540
12
BC3
SOFTWARE
TYR A:488 , HIS A:495 , HOH A:997 , HOH A:998
BINDING SITE FOR RESIDUE GOL A 541
13
BC4
SOFTWARE
ARG A:48 , TYR A:74
BINDING SITE FOR RESIDUE GOL A 542
14
BC5
SOFTWARE
ILE A:133 , ASN A:134 , VAL A:135 , ALA A:156
BINDING SITE FOR RESIDUE GOL A 543
15
BC6
SOFTWARE
GLU A:169 , ARG A:253 , TYR A:286 , GLU A:288 , GLY A:289 , GLU A:331 , ILE A:429 , ZIP A:536 , GOL A:545 , HOH A:733
BINDING SITE FOR RESIDUE GOL A 544
16
BC7
SOFTWARE
ARG A:253 , THR A:304 , ARG A:377 , GLU A:381 , ZIP A:536 , GOL A:544 , HOH A:733 , HOH A:869
BINDING SITE FOR RESIDUE GOL A 545
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:65-245)
2: OX2_COVAL_FAD (A:69-105)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
CKX1_MAIZE
65-245
1
A:65-245
2
OX2_COVAL_FAD
PS00862
Oxygen oxidoreductases covalent FAD-binding site.
CKX1_MAIZE
69-105
1
A:69-105
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3s1fa1 (A:33-245)
2a: SCOP_d3s1fa2 (A:246-534)
View:
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Classes
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Maize (Zea mays) [TaxId: 4577]
(10)
1a
d3s1fa1
A:33-245
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Cytokinin dehydrogenase 1
(14)
Protein domain
:
automated matches
(10)
Maize (Zea mays) [TaxId: 4577]
(10)
2a
d3s1fa2
A:246-534
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein
Nucleic
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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