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3S1E
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
PRO427GLN MUTANT OF MAIZE CYTOKININ OXIDASE/DEHYDROGENASE COMPLEXED WITH N6-ISOPENTENYLADENINE
Authors
:
D. Kopecny, P. Briozzo, S. Morera
Date
:
15 May 11 (Deposition) - 23 May 12 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Fad Binding Protein, Flavoprotein, Cytokinin Oxidase/Dehydrogenase, Cytokinin Binding, Glycosylation, Covalent Flavination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kopecny, R. Koncitikova, H. Popelka, P. Briozzo, A. Vigouroux, M. Kopecna, D. Zalabak, M. Sebela, J. Skopalova, I. Frebort, S. Morera
Kinetic And Structural Investigation Of The Cytokinin Oxidase/Dehydrogenase Active Site.
Febs J. V. 283 361 2016
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN... (ZIPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GOL
3
Ligand/Ion
GLYCEROL
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
ZIP
1
Ligand/Ion
N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:61 , PHE A:100 , GLY A:102 , ARG A:103 , GLY A:104 , HIS A:105 , SER A:106 , GLN A:110 , ALA A:111 , MET A:121 , THR A:168 , ASP A:169 , TYR A:170 , THR A:174 , GLY A:176 , GLY A:177 , SER A:180 , ASN A:181 , GLY A:183 , ILE A:184 , GLY A:230 , GLY A:233 , VAL A:234 , ILE A:235 , TRP A:391 , TYR A:491 , LEU A:492 , SER A:527 , GLN A:530 , ZIP A:536 , HOH A:769 , HOH A:777 , HOH A:867
BINDING SITE FOR RESIDUE FAD A 535
02
AC2
SOFTWARE
ASP A:169 , VAL A:378 , GLU A:381 , TRP A:397 , GLN A:427 , ILE A:429 , SER A:456 , LEU A:458 , FAD A:535
BINDING SITE FOR RESIDUE ZIP A 536
03
AC3
SOFTWARE
THR A:59 , ASN A:63 , HOH A:804
BINDING SITE FOR RESIDUE NAG A 603
04
AC4
SOFTWARE
ASN A:294 , GLN A:295 , ASN A:323 , ALA A:324 , NAG A:605 , HOH A:930
BINDING SITE FOR RESIDUE NAG A 604
05
AC5
SOFTWARE
NAG A:604
BINDING SITE FOR RESIDUE NAG A 605
06
AC6
SOFTWARE
ASN A:323 , THR A:325 , HOH A:843 , HOH A:849 , HOH A:853
BINDING SITE FOR RESIDUE NAG A 606
07
AC7
SOFTWARE
LEU A:354 , LEU A:357 , SER A:358 , TYR A:359 , HOH A:956
BINDING SITE FOR RESIDUE GOL A 537
08
AC8
SOFTWARE
ALA A:298 , ALA A:313 , HOH A:798 , HOH A:855
BINDING SITE FOR RESIDUE GOL A 538
09
AC9
SOFTWARE
TYR A:96
BINDING SITE FOR RESIDUE PEG A 539
10
BC1
SOFTWARE
TYR A:488 , ARG A:503 , HIS A:504 , HOH A:730
BINDING SITE FOR RESIDUE GOL A 540
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:65-245)
2: OX2_COVAL_FAD (A:69-105)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
CKX1_MAIZE
65-245
1
A:65-245
2
OX2_COVAL_FAD
PS00862
Oxygen oxidoreductases covalent FAD-binding site.
CKX1_MAIZE
69-105
1
A:69-105
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3s1ea1 (A:32-245)
2a: SCOP_d3s1ea2 (A:246-534)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Maize (Zea mays) [TaxId: 4577]
(10)
1a
d3s1ea1
A:32-245
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Cytokinin dehydrogenase 1
(14)
Protein domain
:
automated matches
(10)
Maize (Zea mays) [TaxId: 4577]
(10)
2a
d3s1ea2
A:246-534
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (94 KB)
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