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3S1C
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
MAIZE CYTOKININ OXIDASE/DEHYDROGENASE COMPLEXED WITH N6-ISOPENTENYLADENOSINE
Authors
:
D. Kopecny, P. Briozzo, S. Morera
Date
:
15 May 11 (Deposition) - 23 May 12 (Release) - 20 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Fad Binding Protein, Flavoprotein, Cytokinin Oxidase/Dehydrogenase, Cytokinin Binding, Glycosylation, Covalent Flavination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kopecny, R. Koncitikova, H. Popelka, P. Briozzo, A. Vigouroux, M. Kopecna, D. Zalabak, M. Sebela, J. Skopalova, I. Frebort, S. Morera
Kinetic And Structural Investigation Of The Cytokinin Oxidase/Dehydrogenase Active Site.
Febs J. V. 283 361 2016
[
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Hetero Components
(6, 28)
Info
All Hetero Components
1a: POLYETHYLENE GLYCOL (N=34) (15Pa)
1b: POLYETHYLENE GLYCOL (N=34) (15Pb)
1c: POLYETHYLENE GLYCOL (N=34) (15Pc)
1d: POLYETHYLENE GLYCOL (N=34) (15Pd)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: N-(3-METHYLBUT-2-EN-1-YL)ADENOSINE (ZIRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
15P
4
Ligand/Ion
POLYETHYLENE GLYCOL (N=34)
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
GOL
14
Ligand/Ion
GLYCEROL
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZIR
1
Ligand/Ion
N-(3-METHYLBUT-2-EN-1-YL)ADENOSINE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:61 , PHE A:100 , ARG A:101 , GLY A:102 , ARG A:103 , GLY A:104 , HIS A:105 , SER A:106 , GLN A:110 , ALA A:111 , MET A:121 , THR A:168 , ASP A:169 , TYR A:170 , LEU A:173 , THR A:174 , GLY A:176 , GLY A:177 , THR A:178 , SER A:180 , ASN A:181 , GLY A:183 , ILE A:184 , GLY A:230 , GLY A:233 , VAL A:234 , ILE A:235 , TRP A:391 , TRP A:397 , TYR A:491 , LEU A:492 , SER A:527 , GLN A:530 , ZIR A:536 , HOH A:751 , HOH A:789 , HOH A:790
BINDING SITE FOR RESIDUE FAD A 535
02
AC2
SOFTWARE
ASP A:169 , ARG A:253 , ASN A:303 , THR A:304 , VAL A:378 , GLU A:381 , TRP A:397 , ASN A:399 , PRO A:427 , ILE A:429 , SER A:456 , LEU A:458 , FAD A:535 , GOL A:547 , GOL A:548 , 15P A:552 , HOH A:817
BINDING SITE FOR RESIDUE ZIR A 536
03
AC3
SOFTWARE
ARG A:103 , GLY A:104 , HIS A:105 , TRP A:391 , ARG A:392
BINDING SITE FOR RESIDUE GOL A 537
04
AC4
SOFTWARE
ARG A:190 , HIS A:191 , GLU A:243 , SER A:285
BINDING SITE FOR RESIDUE GOL A 538
05
AC5
SOFTWARE
ALA A:298 , VAL A:312 , ALA A:313 , VAL A:316 , GOL A:544 , HOH A:940 , HOH A:994 , HOH A:1008
BINDING SITE FOR RESIDUE GOL A 539
06
AC6
SOFTWARE
GOL A:543 , PEG A:555 , HOH A:990
BINDING SITE FOR RESIDUE GOL A 540
07
AC7
SOFTWARE
SER A:196 , SER A:436 , MET A:437 , TRP A:438 , ASP A:439 , GOL A:549 , HOH A:968
BINDING SITE FOR RESIDUE GOL A 541
08
AC8
SOFTWARE
ARG A:367 , ASP A:368 , VAL A:369 , HOH A:707
BINDING SITE FOR RESIDUE GOL A 542
09
AC9
SOFTWARE
ALA A:260 , ALA A:317 , GLY A:320 , GLU A:321 , GOL A:540 , PEG A:555 , HOH A:756 , HOH A:769 , HOH A:998
BINDING SITE FOR RESIDUE GOL A 543
10
BC1
SOFTWARE
GLN A:487 , GOL A:539 , HOH A:809 , HOH A:940
BINDING SITE FOR RESIDUE GOL A 544
11
BC2
SOFTWARE
ARG A:250 , GLN A:366 , ASP A:368 , HOH A:1000
BINDING SITE FOR RESIDUE GOL A 545
12
BC3
SOFTWARE
ARG A:314
BINDING SITE FOR RESIDUE GOL A 546
13
BC4
SOFTWARE
ASP A:300 , GLU A:381 , ZIR A:536
BINDING SITE FOR RESIDUE GOL A 547
14
BC5
SOFTWARE
VAL A:378 , GLU A:381 , LEU A:385 , TRP A:391 , PRO A:427 , ZIR A:536 , HOH A:768
BINDING SITE FOR RESIDUE GOL A 548
15
BC6
SOFTWARE
ARG A:165 , SER A:196 , ALA A:241 , GOL A:541
BINDING SITE FOR RESIDUE GOL A 549
16
BC7
SOFTWARE
ASN A:181 , LEU A:229 , THR A:490 , TYR A:491 , LEU A:492 , ALA A:493 , HIS A:504 , HOH A:725 , HOH A:1024
BINDING SITE FOR RESIDUE GOL A 550
17
BC8
SOFTWARE
ARG A:322 , VAL A:360 , GLU A:361 , PHE A:363 , ARG A:406 , ASP A:409 , ARG A:412 , PHE A:480 , ALA A:484 , HOH A:761 , HOH A:935
BINDING SITE FOR RESIDUE 15P A 551
18
BC9
SOFTWARE
ASP A:169 , TRP A:251 , ARG A:253 , TYR A:286 , GLU A:288 , THR A:304 , PHE A:306 , GLU A:331 , ARG A:367 , ARG A:377 , ZIR A:536 , HOH A:740
BINDING SITE FOR RESIDUE 15P A 552
19
CC1
SOFTWARE
ARG A:412 , LYS A:416
BINDING SITE FOR RESIDUE 15P A 553
20
CC2
SOFTWARE
PHE A:306 , ASP A:311 , ALA A:364 , PHE A:365 , GLN A:366 , ARG A:367
BINDING SITE FOR RESIDUE 15P A 554
21
CC3
SOFTWARE
ALA A:260 , ALA A:264 , GLU A:267 , ARG A:268 , ARG A:404 , GOL A:540 , GOL A:543 , HOH A:915
BINDING SITE FOR RESIDUE PEG A 555
22
CC4
SOFTWARE
ARG A:155 , LEU A:158 , HOH A:741
BINDING SITE FOR RESIDUE PEG A 556
23
CC5
SOFTWARE
TYR A:96
BINDING SITE FOR RESIDUE PEG A 557
24
CC6
SOFTWARE
ASN A:303 , GLY A:305 , GLU A:381 , LEU A:385 , ASN A:511
BINDING SITE FOR RESIDUE PEG A 558
25
CC7
SOFTWARE
THR A:59 , ASN A:63 , ILE A:64 , SER A:66 , HOH A:735 , HOH A:980
BINDING SITE FOR RESIDUE NAG A 601
26
CC8
SOFTWARE
ASN A:294 , GLN A:295 , ASN A:323 , NAG A:603 , HOH A:925
BINDING SITE FOR RESIDUE NAG A 602
27
CC9
SOFTWARE
NAG A:602 , HOH A:951
BINDING SITE FOR RESIDUE NAG A 603
28
DC1
SOFTWARE
ASN A:323 , THR A:325 , HOH A:757 , HOH A:820
BINDING SITE FOR RESIDUE NAG A 604
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FAD_PCMH (A:65-245)
2: OX2_COVAL_FAD (A:69-105)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FAD_PCMH
PS51387
PCMH-type FAD-binding domain profile.
CKX1_MAIZE
65-245
1
A:65-245
2
OX2_COVAL_FAD
PS00862
Oxygen oxidoreductases covalent FAD-binding site.
CKX1_MAIZE
69-105
1
A:69-105
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3s1ca1 (A:33-245)
2a: SCOP_d3s1ca2 (A:246-534)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Maize (Zea mays) [TaxId: 4577]
(10)
1a
d3s1ca1
A:33-245
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
FAD-linked oxidases, C-terminal domain
(42)
Family
:
Cytokinin dehydrogenase 1
(14)
Protein domain
:
automated matches
(10)
Maize (Zea mays) [TaxId: 4577]
(10)
2a
d3s1ca2
A:246-534
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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