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3RZI
Asym. Unit
Info
Asym.Unit (307 KB)
Biol.Unit 1 (595 KB)
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(1)
Title
:
THE STRUCTURE OF 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS COCRYSTALLIZED AND COMPLEXED WITH PHENYLALANINE AND TRYPTOPHAN
Authors
:
W. Jiao, G. B. Jameson, R. D. Hutton, E. J. Parker
Date
:
11 May 11 (Deposition) - 25 Jan 12 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Dah7P Synthase, Shikimate Pathway, Aromatic Biosynthesis, Evolutionary Relationships, Transferase, Phe+Trp-Bound, Augmented Tim-Barrel Structure, Structural Genomics, Mycobacterium Tuberculosis Structural Proteomics Project, Xmtb, Tim Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Jiao, R. D. Hutton, P. J. Cross, G. B. Jameson, E. J. Parker
Dynamic Cross-Talk Among Remote Binding Sites: The Molecula Basis For Unusual Synergistic Allostery.
J. Mol. Biol. V. 415 716 2012
[
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: PHENYLALANINE (PHEa)
4b: PHENYLALANINE (PHEb)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
7a: TRYPTOPHAN (TRPa)
7b: TRYPTOPHAN (TRPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GOL
8
Ligand/Ion
GLYCEROL
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
PHE
2
Mod. Amino Acid
PHENYLALANINE
5
PO4
2
Ligand/Ion
PHOSPHATE ION
6
SO4
4
Ligand/Ion
SULFATE ION
7
TRP
2
Mod. Amino Acid
TRYPTOPHAN
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:87 , HIS A:369 , GLU A:411 , ASP A:441 , HOH A:567
BINDING SITE FOR RESIDUE MN A 463
02
AC2
SOFTWARE
PHE A:91 , ARG A:171 , ALA A:174 , ASN A:175 , HOH A:487 , HOH A:599 , VAL B:5
BINDING SITE FOR RESIDUE PHE A 464
03
AC3
SOFTWARE
LEU A:107 , VAL A:111 , LYS A:123 , ALA A:192 , LEU A:194 , CYS A:231 , ASN A:237 , LEU A:238 , THR A:240 , ALA A:241 , GOL A:469 , HOH A:496 , HOH A:514 , HOH A:633
BINDING SITE FOR RESIDUE TRP A 465
04
AC4
SOFTWARE
GLY A:282 , GLU A:283 , LYS A:306 , ARG A:337 , HIS A:369
BINDING SITE FOR RESIDUE PO4 A 466
05
AC5
SOFTWARE
THR A:39 , ARG A:145 , ARG A:148 , HIS A:164 , HOH A:528
BINDING SITE FOR RESIDUE SO4 A 467
06
AC6
SOFTWARE
GLU A:63 , THR A:187 , GLU A:242 , ILE A:243 , TYR A:244 , HOH A:664
BINDING SITE FOR RESIDUE GOL A 468
07
AC7
SOFTWARE
GLN A:70 , VAL A:121 , VAL A:122 , LYS A:123 , GLU A:242 , TRP A:465 , HOH A:496 , HOH A:592
BINDING SITE FOR RESIDUE GOL A 469
08
AC8
SOFTWARE
GLN A:36
BINDING SITE FOR RESIDUE CL A 470
09
AC9
SOFTWARE
ARG A:135 , SER A:136 , ALA A:137 , ARG A:284
BINDING SITE FOR RESIDUE GOL A 471
10
BC1
SOFTWARE
CYS B:87 , HIS B:369 , GLU B:411 , ASP B:441 , HOH B:533
BINDING SITE FOR RESIDUE MN B 463
11
BC2
SOFTWARE
LEU B:30 , ASP B:253 , ARG B:256
BINDING SITE FOR RESIDUE GOL B 464
12
BC3
SOFTWARE
VAL A:55 , TYR A:173 , HOH A:616 , PHE B:91 , ARG B:171 , ALA B:174 , ASN B:175 , HOH B:598
BINDING SITE FOR RESIDUE PHE B 465
13
BC4
SOFTWARE
VAL B:111 , LYS B:123 , ALA B:192 , LEU B:194 , ASN B:237 , LEU B:238 , THR B:240 , ALA B:241 , HOH B:510 , HOH B:560 , HOH B:584 , HOH B:694
BINDING SITE FOR RESIDUE TRP B 466
14
BC5
SOFTWARE
GLY B:282 , GLU B:283 , LYS B:306 , ARG B:337 , HOH B:593 , HOH B:635 , HOH B:651
BINDING SITE FOR RESIDUE PO4 B 467
15
BC6
SOFTWARE
ARG B:135 , SER B:136 , ALA B:137 , ARG B:284 , HOH B:727
BINDING SITE FOR RESIDUE SO4 B 468
16
BC7
SOFTWARE
PRO B:17 , LEU B:18 , ARG B:23 , LEU B:144 , ASP B:158 , ALA B:159 , HOH B:480 , HOH B:634
BINDING SITE FOR RESIDUE SO4 B 469
17
BC8
SOFTWARE
ARG B:23 , ARG B:256 , HOH B:562 , HOH B:606
BINDING SITE FOR RESIDUE SO4 B 470
18
BC9
SOFTWARE
ARG A:23 , THR A:24 , ASP A:27 , GLN B:297 , ARG B:322 , HOH B:487 , HOH B:537
BINDING SITE FOR RESIDUE GOL B 472
19
CC1
SOFTWARE
MET B:180 , THR B:187 , GLU B:242 , ILE B:243 , HIS B:277
BINDING SITE FOR RESIDUE GOL B 473
20
CC2
SOFTWARE
MET B:92 , ASP B:93 , PHE B:155 , GLU B:437 , HOH B:540
BINDING SITE FOR RESIDUE GOL B 474
21
CC3
SOFTWARE
GLN B:70 , PRO B:120 , VAL B:121 , GLU B:242 , HOH B:510 , HOH B:511 , HOH B:535 , HOH B:584
BINDING SITE FOR RESIDUE GOL B 475
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3rzia_ (A:)
1b: SCOP_d3rzib_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class-II DAHP synthetase
(13)
Protein domain
:
automated matches
(8)
Mycobacterium tuberculosis [TaxId: 83332]
(6)
1a
d3rzia_
A:
1b
d3rzib_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (307 KB)
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Header - Biol.Unit 1
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