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3RYI
Asym. Unit
Info
Asym.Unit (652 KB)
Biol.Unit 1 (643 KB)
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(1)
Title
:
GDP-TUBULIN: RB3 STATHMIN-LIKE DOMAIN COMPLEX
Authors
:
A. Nawrotek, M. Knossow, B. Gigant
Date
:
11 May 11 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Alpha-Tubulin, Beta-Tubulin, Gdp, Gtpase, Microtubule, Stathmin S- Tubulin, Subtilisin, Tubulin, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Nawrotek, M. Knossow, B. Gigant
The Determinants That Govern Microtubule Assembly From The Atomic Structure Of Gtp-Tubulin.
J. Mol. Biol. V. 412 35 2011
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
SO4
12
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:69 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ILE A:171 , VAL A:177 , THR A:179 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , HOH A:464 , HOH A:473 , HOH A:563 , HOH A:592 , HOH A:593 , HOH A:598 , MG A:601 , HOH A:642 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 600
02
AC2
SOFTWARE
HOH A:592 , HOH A:593 , GTP A:600 , HOH A:642 , HOH A:645
BINDING SITE FOR RESIDUE MG A 601
03
AC3
SOFTWARE
PRO A:175 , LYS A:394 , HOH A:539 , HOH A:636 , ASN B:349
BINDING SITE FOR RESIDUE SO4 A 452
04
AC4
SOFTWARE
ARG A:215 , ASN A:216 , VAL A:275 , ALA A:294 , HOH A:476 , HOH A:513 , LYS D:124
BINDING SITE FOR RESIDUE SO4 A 453
05
AC5
SOFTWARE
ARG A:308 , ARG A:339 , SER A:340 , HOH A:533 , HOH A:538 , HOH D:566
BINDING SITE FOR RESIDUE SO4 A 454
06
AC6
SOFTWARE
VAL A:177 , ARG A:221 , PRO A:222 , TYR A:224 , HOH A:558
BINDING SITE FOR RESIDUE SO4 A 455
07
AC7
SOFTWARE
ASP A:431 , GLU A:434 , HOH A:545
BINDING SITE FOR RESIDUE SO4 A 456
08
AC8
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , ILE B:16 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , PRO B:173 , VAL B:177 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , HOH B:459 , HOH B:462 , HOH B:463 , HOH B:464 , HOH B:480 , HOH B:496 , HOH B:514 , HOH B:556 , HOH B:603
BINDING SITE FOR RESIDUE GDP B 600
09
AC9
SOFTWARE
THR B:223 , GLY B:225 , ARG B:278
BINDING SITE FOR RESIDUE SO4 B 456
10
BC1
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:69 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ILE C:171 , VAL C:177 , THR C:179 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , HOH C:461 , HOH C:469 , HOH C:514 , HOH C:596 , HOH C:597 , HOH C:598 , MG C:601 , HOH C:621 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 600
11
BC2
SOFTWARE
HOH C:596 , HOH C:597 , HOH C:598 , GTP C:600 , HOH C:621
BINDING SITE FOR RESIDUE MG C 601
12
BC3
SOFTWARE
PRO C:175 , LYS C:394 , HOH C:560 , HOH C:577 , ASN D:349
BINDING SITE FOR RESIDUE SO4 C 452
13
BC4
SOFTWARE
ASP C:431 , VAL C:435 , HOH C:475
BINDING SITE FOR RESIDUE SO4 C 453
14
BC5
SOFTWARE
GLU C:196 , PRO C:263 , HOH C:479 , HOH C:566
BINDING SITE FOR RESIDUE SO4 C 454
15
BC6
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ASN D:101 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , PRO D:173 , SER D:178 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , HOH D:458 , HOH D:460 , HOH D:461 , HOH D:477 , HOH D:528 , HOH D:546 , HOH D:555 , HOH D:573
BINDING SITE FOR RESIDUE GDP D 600
16
BC7
SOFTWARE
THR D:223 , GLY D:225 , ARG D:278 , ALA D:403 , PHE D:404 , HOH D:486 , HOH D:492 , HOH D:601
BINDING SITE FOR RESIDUE SO4 D 456
17
BC8
SOFTWARE
LYS D:19 , HIS D:229 , SER D:232 , ARG D:278 , HOH D:524 , HOH D:562
BINDING SITE FOR RESIDUE SO4 D 457
18
BC9
SOFTWARE
HIS E:115 , ARG E:122
BINDING SITE FOR RESIDUE SO4 E 146
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: STATHMIN_3 (E:5-145)
2: STATHMIN_1 (E:41-49)
3: STATHMIN_2 (E:73-82)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
STATHMIN_3
PS51663
Stathmin-like (SLD) domain profile.
STMN4_RAT
48-189
1
E:5-145
2
STATHMIN_1
PS00563
Stathmin family signature 1.
STMN4_RAT
84-93
1
E:41-49
3
STATHMIN_2
PS01041
Stathmin family signature 2.
STMN4_RAT
117-126
1
E:73-82
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 9)
Info
All SCOP Domains
1a: SCOP_d3ryie_ (E:)
2a: SCOP_d3ryia2 (A:246-438)
2b: SCOP_d3ryic2 (C:246-438)
2c: SCOP_d3ryid2 (D:246-441)
2d: SCOP_d3ryib2 (B:246-441)
3a: SCOP_d3ryia1 (A:1-245)
3b: SCOP_d3ryic1 (C:1-245)
3c: SCOP_d3ryid1 (D:1-245)
3d: SCOP_d3ryib1 (B:1-245)
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)
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Stathmin
(21)
Family
:
Stathmin
(21)
Protein domain
:
Stathmin 4
(21)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
1a
d3ryie_
E:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
Tubulin C-terminal domain-like
(76)
Family
:
Tubulin, C-terminal domain
(69)
Protein domain
:
automated matches
(19)
Sheep (Ovis aries) [TaxId: 9940]
(8)
2a
d3ryia2
A:246-438
2b
d3ryic2
C:246-438
2c
d3ryid2
D:246-441
2d
d3ryib2
B:246-441
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tubulin nucleotide-binding domain-like
(75)
Superfamily
:
Tubulin nucleotide-binding domain-like
(75)
Family
:
Tubulin, GTPase domain
(69)
Protein domain
:
automated matches
(20)
Sheep (Ovis aries) [TaxId: 9940]
(8)
3a
d3ryia1
A:1-245
3b
d3ryic1
C:1-245
3c
d3ryid1
D:1-245
3d
d3ryib1
B:1-245
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain E
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