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3RY6
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
COMPLEX OF FCGAMMARIIA (CD32) AND THE FC OF HUMAN IGG1
Authors
:
P. A. Ramsland, W. Farrugia, A. M. Scott, P. M. Hogarth
Date
:
11 May 11 (Deposition) - 31 Aug 11 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Fc Receptor, Cd32, Immunoglobulin Superfamily, High Responder Polymorphism, Human Igg1, Therapeutic Antibody, Glycoprotein, Immunoglobulin C Region, Immunoglobulin Domain, Cell Membrane, Igg- Binding Protein, Membrane, Phosphoprotein, Receptor, Transmembrane, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. A. Ramsland, W. Farrugia, T. M. Bradford, C. T. Sardjono, S. Esparon H. M. Trist, M. S. Powell, P. S. Tan, A. C. Cendron, B. D. Wines, A. M. Scott, P. M. Hogarth
Structural Basis For Fc{Gamma}Riia Recognition Of Human Igg And Formation Of Inflammatory Signaling Complexes.
J. Immunol. V. 187 3208 2011
[
close entry info
]
Hetero Components
(8, 33)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
2c: BETA-L-FUCOSE (FULc)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
8a: O-SIALIC ACID (SIAa)
8b: O-SIALIC ACID (SIAb)
8c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FUL
3
Ligand/Ion
BETA-L-FUCOSE
3
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
4
GOL
4
Ligand/Ion
GLYCEROL
5
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
8
SIA
3
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:265 , ASN A:297 , THR A:299 , FUL A:802 , NAG A:803
BINDING SITE FOR RESIDUE NDG A 801
02
AC2
SOFTWARE
NDG A:801 , MAN A:805
BINDING SITE FOR RESIDUE FUL A 802
03
AC3
SOFTWARE
VAL A:264 , TYR A:296 , ARG A:301 , NDG A:801 , BMA A:804 , MAN A:805
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
PHE A:243 , NAG A:803 , MAN A:805 , MAN A:808 , SIA A:811
BINDING SITE FOR RESIDUE BMA A 804
05
AC5
SOFTWARE
FUL A:802 , NAG A:803 , BMA A:804 , NAG A:806
BINDING SITE FOR RESIDUE MAN A 805
06
AC6
SOFTWARE
MAN A:805 , SIA A:811
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
BMA A:804 , NAG A:809 , NAG B:809
BINDING SITE FOR RESIDUE MAN A 808
08
AC8
SOFTWARE
PHE A:241 , MAN A:808 , GAL A:810
BINDING SITE FOR RESIDUE NAG A 809
09
AC9
SOFTWARE
NAG A:809 , SIA A:811
BINDING SITE FOR RESIDUE GAL A 810
10
BC1
SOFTWARE
PHE A:241 , PHE A:243 , BMA A:804 , NAG A:806 , GAL A:810
BINDING SITE FOR RESIDUE SIA A 811
11
BC2
SOFTWARE
ASN B:297 , FUL B:802 , NAG B:803
BINDING SITE FOR RESIDUE NAG B 801
12
BC3
SOFTWARE
ASN B:297 , NAG B:801 , SER C:129
BINDING SITE FOR RESIDUE FUL B 802
13
BC4
SOFTWARE
TYR B:296 , NAG B:801 , BMA B:804
BINDING SITE FOR RESIDUE NAG B 803
14
BC5
SOFTWARE
NAG B:803 , MAN B:805 , NAG B:806 , MAN B:808
BINDING SITE FOR RESIDUE BMA B 804
15
BC6
SOFTWARE
BMA B:804 , NAG B:806
BINDING SITE FOR RESIDUE MAN B 805
16
BC7
SOFTWARE
BMA B:804 , MAN B:805 , GAL B:807
BINDING SITE FOR RESIDUE NAG B 806
17
BC8
SOFTWARE
PRO B:245 , LYS B:246 , ASP B:249 , PRO B:257 , NAG B:806 , SIA B:812
BINDING SITE FOR RESIDUE GAL B 807
18
BC9
SOFTWARE
PHE B:243 , BMA B:804 , NAG B:809
BINDING SITE FOR RESIDUE MAN B 808
19
CC1
SOFTWARE
MAN A:808 , PHE B:241 , PHE B:243 , MAN B:808 , GAL B:810
BINDING SITE FOR RESIDUE NAG B 809
20
CC2
SOFTWARE
NAG B:809 , SIA B:811
BINDING SITE FOR RESIDUE GAL B 810
21
CC3
SOFTWARE
PRO A:395 , GAL B:810
BINDING SITE FOR RESIDUE SIA B 811
22
CC4
SOFTWARE
GLU B:258 , LYS B:290 , ARG B:292 , GLN B:294 , GAL B:807
BINDING SITE FOR RESIDUE SIA B 812
23
CC5
SOFTWARE
THR B:359 , LYS B:414 , ASN C:145 , HIS C:148 , NAG C:201 , FUL C:202
BINDING SITE FOR RESIDUE NDG C 200
24
CC6
SOFTWARE
LYS B:360 , NDG C:200 , FUL C:202 , MAN C:203
BINDING SITE FOR RESIDUE NAG C 201
25
CC7
SOFTWARE
GLN B:311 , NDG C:200 , NAG C:201
BINDING SITE FOR RESIDUE FUL C 202
26
CC8
SOFTWARE
ASN A:384 , NAG C:201 , MAN C:204 , BMA C:205
BINDING SITE FOR RESIDUE MAN C 203
27
CC9
SOFTWARE
ARG A:344 , GLU A:345 , GLN A:347 , LYS B:317 , LYS B:360 , MAN C:203
BINDING SITE FOR RESIDUE MAN C 204
28
DC1
SOFTWARE
TYR A:349 , VAL A:422 , GLU B:356 , MAN C:203
BINDING SITE FOR RESIDUE BMA C 205
29
DC2
SOFTWARE
ASN C:64
BINDING SITE FOR RESIDUE NAG C 206
30
DC3
SOFTWARE
ARG A:255
BINDING SITE FOR RESIDUE GOL A 600
31
DC4
SOFTWARE
ARG A:355 , LEU B:443 , SER B:444
BINDING SITE FOR RESIDUE GOL B 601
32
DC5
SOFTWARE
ARG B:355
BINDING SITE FOR RESIDUE GOL B 603
[
close Site info
]
SAPs(SNPs)/Variants
(5, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054857 (Q30R, chain C, )
2: VAR_054858 (M107V, chain C, )
3: VAR_003955 (R134R, chain C, )
4: VAR_003887 (E356E, chain A/B, )
5: VAR_003888 (M358M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054857
Q
63
R
FCG2A_HUMAN
Polymorphism
9427398
C
Q
30
R
2
UniProt
VAR_054858
M
140
V
FCG2A_HUMAN
Polymorphism
4986941
C
M
107
V
3
UniProt
VAR_003955
H
167
R
FCG2A_HUMAN
Polymorphism
1801274
C
R
134
R
4
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
A/B
E
356
E
5
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
A/B
M
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429,B:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
2
-
A:423-429
B:423-429
[
close PROSITE info
]
Exons
(5, 8)
Info
All Exons
Exon 1.1j (C:7-89)
Exon 1.3a (C:89-173)
Exon 2.2 (A:231-231 | B:231-231)
Exon 2.3b (A:231-341 | B:231-341)
Exon 2.4c (A:341-444 | B:341-444)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1g/1.1j
2: Boundary 1.1j/1.3a
3: Boundary 1.3a/1.4a
4: Boundary 2.1/2.2
5: Boundary 2.2/2.3b
6: Boundary 2.3b/2.4c
7: Boundary 2.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000271450
1a
ENSE00001170978
chr1:
161475220-161475342
123
FCG2A_HUMAN
1-29
29
0
-
-
1.1g
ENST00000271450
1g
ENSE00000958752
chr1:
161475777-161475797
21
FCG2A_HUMAN
29-36
8
0
-
-
1.1j
ENST00000271450
1j
ENSE00001651726
chr1:
161476124-161476381
258
FCG2A_HUMAN
36-122
87
1
C:7-89
83
1.3a
ENST00000271450
3a
ENSE00001614571
chr1:
161479610-161479864
255
FCG2A_HUMAN
122-207
86
1
C:89-173
85
1.4a
ENST00000271450
4a
ENSE00000958755
chr1:
161480624-161480746
123
FCG2A_HUMAN
207-248
42
0
-
-
1.6a
ENST00000271450
6a
ENSE00001643425
chr1:
161483685-161483722
38
FCG2A_HUMAN
248-260
13
0
-
-
1.8h
ENST00000271450
8h
ENSE00001170974
chr1:
161487765-161489358
1594
FCG2A_HUMAN
261-317
57
0
-
-
2.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
2.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
2
A:231-231
B:231-231
1
1
2.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
2
A:231-341
B:231-341
111
111
2.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
2
A:341-444
B:341-444
104
104
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
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(currently selected atoms:
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)
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Protein & NOT PROSITE
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Asym.Unit (110 KB)
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