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3RVJ
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89: N59D AND E89Q
Authors
:
C. A. Starbird, R. M. Immormino, R. E. Silversmith, R. B. Bourret
Date
:
06 May 11 (Deposition) - 09 May 12 (Release) - 21 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Response Regulator, Two-Component, Signal Transduction, Chey, Beta- Alpha Protein, Chemotaxis, Chea Chex Chez, Phosphorylation, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Immormino, C. A. Starbird, R. E. Silversmith, R. B. Bourret
Probing Mechanistic Similarities Between Response Regulator Signaling Proteins And Haloacid Dehalogenase Phosphatases.
Biochemistry V. 54 3514 2015
[
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: BERYLLIUM TRIFLUORIDE ION (BEFa)
1b: BERYLLIUM TRIFLUORIDE ION (BEFb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BEF
2
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
2
GOL
12
Ligand/Ion
GLYCEROL
3
MN
2
Ligand/Ion
MANGANESE (II) ION
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: DC1 (AUTHOR)
22: DC2 (AUTHOR)
23: DC3 (AUTHOR)
24: DC4 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:13 , ASP A:57 , ASP A:59 , BEF A:131 , HOH A:212 , HOH A:214
BINDING SITE FOR RESIDUE MN A 130
02
AC2
SOFTWARE
ASP A:57 , TRP A:58 , ASP A:59 , THR A:87 , ALA A:88 , LYS A:109 , MN A:130 , HOH A:221
BINDING SITE FOR RESIDUE BEF A 131
03
AC3
SOFTWARE
ASP B:13 , ASP B:57 , ASP B:59 , BEF B:131 , HOH B:197 , HOH B:198
BINDING SITE FOR RESIDUE MN B 130
04
AC4
SOFTWARE
ASP B:57 , TRP B:58 , ASP B:59 , THR B:87 , ALA B:88 , LYS B:109 , MN B:130 , HOH B:197 , HOH B:198
BINDING SITE FOR RESIDUE BEF B 131
05
AC5
SOFTWARE
LYS A:92 , HOH A:262 , HOH A:265 , LYS B:92
BINDING SITE FOR RESIDUE SO4 A 132
06
AC6
SOFTWARE
ASP B:13 , PHE B:14 , SER B:15 , HOH B:223
BINDING SITE FOR RESIDUE SO4 B 132
07
AC7
SOFTWARE
LYS B:7 , ASN B:32 , HOH B:258
BINDING SITE FOR RESIDUE SO4 B 133
08
AC8
SOFTWARE
ASP A:13 , PHE A:14 , SER A:15 , HOH A:188 , HOH A:263 , HOH A:264
BINDING SITE FOR RESIDUE SO4 A 133
09
AC9
SOFTWARE
HIS A:0 , GLY A:50
BINDING SITE FOR RESIDUE GOL A 134
10
BC1
SOFTWARE
ARG A:19 , LYS A:70 , HOH A:177 , HOH A:235 , LYS B:126
BINDING SITE FOR RESIDUE GOL A 135
11
BC2
SOFTWARE
LYS A:91 , LYS A:92 , GLU A:93 , HOH A:256
BINDING SITE FOR RESIDUE GOL A 136
12
BC3
SOFTWARE
ARG B:19 , HOH B:246 , HOH B:253 , HOH B:254
BINDING SITE FOR RESIDUE GOL B 134
13
BC4
SOFTWARE
HIS B:0 , GLY B:50 , HOH B:256
BINDING SITE FOR RESIDUE GOL B 135
14
BC5
SOFTWARE
ALA A:2 , ASN A:121 , GOL A:138 , HOH A:185
BINDING SITE FOR RESIDUE GOL A 137
15
BC6
SOFTWARE
ALA A:2 , LYS A:4 , GLY A:29 , GOL A:137 , HOH A:260
BINDING SITE FOR RESIDUE GOL A 138
16
BC7
SOFTWARE
ARG A:18 , GLU A:35 , ASP A:41 , LYS A:45
BINDING SITE FOR RESIDUE GOL A 139
17
BC8
SOFTWARE
ALA B:2 , LYS B:4 , LEU B:28 , GLY B:29 , HOH B:184
BINDING SITE FOR RESIDUE GOL B 136
18
BC9
SOFTWARE
ASP A:59 , GLN A:89 , ASN A:94 , HOH A:258
BINDING SITE FOR RESIDUE GOL A 140
19
CC1
SOFTWARE
TRP B:58 , HOH B:158 , HOH B:179 , HOH B:257
BINDING SITE FOR RESIDUE GOL B 137
20
CC2
SOFTWARE
LYS A:7 , ASN A:32 , HOH A:224
BINDING SITE FOR RESIDUE GOL A 141
21
DC1
AUTHOR
ASP A:13 , ASP A:57 , ASP A:59 , BEF A:131 , HOH A:212 , HOH A:214
ACTIVE SITE FOR RESIDUE MN A 130
22
DC2
AUTHOR
ASP A:57 , TRP A:58 , ASP A:59 , THR A:87 , ALA A:88 , LYS A:109 , MN A:130 , HOH A:221
ACTIVE SITE FOR RESIDUE BEF A 131
23
DC3
AUTHOR
ASP B:13 , ASP B:57 , ASP B:59 , BEF B:131 , HOH B:197 , HOH B:198
ACTIVE SITE FOR RESIDUE MN B 130
24
DC4
AUTHOR
ASP B:57 , TRP B:58 , ASP B:59 , THR B:87 , ALA B:88 , LYS B:109 , MN B:130 , HOH B:197 , HOH B:198
ACTIVE SITE FOR RESIDUE BEF B 131
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RESPONSE_REGULATORY (A:7-124,B:7-124)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RESPONSE_REGULATORY
PS50110
Response regulatory domain profile.
CHEY_ECOLI
7-124
2
A:7-124
B:7-124
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3rvja_ (A:)
1b: SCOP_d3rvjb_ (B:)
View:
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Classes
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(
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Folds
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Superfamilies
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
CheY-like
(258)
Family
:
CheY-related
(166)
Protein domain
:
automated matches
(29)
Escherichia coli K-12 [TaxId: 83333]
(17)
1a
d3rvja_
A:
1b
d3rvjb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (54 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Biol.Unit 2 (25 KB)
Header - Biol.Unit 2
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