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3RV5
Biol. Unit 1
Info
Asym.Unit (128 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (30 KB)
Biol.Unit 5 (221 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CARDIAC TROPONIN C REGULATORY DOMAIN IN COMPLEX WITH CADMIUM AND DEOXYCHOLIC ACID
Authors
:
A. Y. Li, J. Lee, D. Borek, Z. Otwinowski, G. Tibbits, M. Paetzel
Date
:
06 May 11 (Deposition) - 31 Aug 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B,C,D (2x)
Keywords
:
Helix-Loop-Helix Ef-Hand Motif, Metal Ion Coordination, Calcium Sensor, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Y. Li, J. Lee, D. Borek, Z. Otwinowski, G. F. Tibbits, M. Paetzel
Crystal Structure Of Cardiac Troponin C Regulatory Domain I Complex With Cadmium And Deoxycholic Acid Reveals Novel Conformation.
J. Mol. Biol. V. 413 699 2011
[
close entry info
]
Hetero Components
(2, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
2i: CADMIUM ION (CDi)
2j: CADMIUM ION (CDj)
2k: CADMIUM ION (CDk)
2l: CADMIUM ION (CDl)
2m: CADMIUM ION (CDm)
2n: CADMIUM ION (CDn)
2o: CADMIUM ION (CDo)
2p: CADMIUM ION (CDp)
2q: CADMIUM ION (CDq)
2r: CADMIUM ION (CDr)
2s: CADMIUM ION (CDs)
2t: CADMIUM ION (CDt)
2u: CADMIUM ION (CDu)
3a: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCa)
3b: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCb)
3c: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCc)
3d: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCd)
3e: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCe)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CD
-1
Ligand/Ion
CADMIUM ION
3
DXC
2
Ligand/Ion
(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:30 , ASP A:33 , CYS A:35 , GLU A:40
BINDING SITE FOR RESIDUE CD A 101
02
AC2
SOFTWARE
GLU A:15 , GLU A:19 , CYS A:35 , HOH A:115 , HOH A:119
BINDING SITE FOR RESIDUE CD A 103
03
AC3
SOFTWARE
ASP A:65 , ASP A:67 , SER A:69 , THR A:71 , GLU A:76 , HOH A:110
BINDING SITE FOR RESIDUE CD A 102
04
AC4
SOFTWARE
ASP A:73 , ASP A:75 , HOH A:120 , HOH A:127 , HOH A:132
BINDING SITE FOR RESIDUE CD A 104
05
AC5
SOFTWARE
GLU A:66 , HOH A:140 , HOH C:123 , HOH C:138
BINDING SITE FOR RESIDUE CD A 105
06
AC6
SOFTWARE
LYS A:17 , PHE A:20 , GLU B:59 , VAL B:82 , CD B:106 , HOH B:135
BINDING SITE FOR RESIDUE DXC A 92
07
AC7
SOFTWARE
VAL A:79 , VAL A:82 , ARG A:83
BINDING SITE FOR RESIDUE DXC B 92
08
AC8
SOFTWARE
PHE A:27 , GLN A:50 , PHE A:77 , HOH A:135 , ILE C:4
BINDING SITE FOR RESIDUE DXC A 91
09
BC7
SOFTWARE
DXC A:92 , GLU B:59 , HOH B:133 , HOH B:134 , HOH B:135
BINDING SITE FOR RESIDUE CD B 106
10
BC8
SOFTWARE
GLU A:14 , ASP B:62
BINDING SITE FOR RESIDUE CD B 107
[
close Site info
]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_063070 (A8V, chain A, )
2: VAR_019776 (L29Q, chain A, )
3: VAR_063071 (C84Y, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_063070
A
8
V
TNNC1_HUMAN
Disease (CMH13)
---
A
A
8
V
2
UniProt
VAR_019776
L
29
Q
TNNC1_HUMAN
Disease (CMH13)
---
A
L
29
Q
3
UniProt
VAR_063071
C
84
Y
TNNC1_HUMAN
Disease (CMH13)
---
A
C
84
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:33-51,A:52-85)
2: EF_HAND_1 (A:65-77)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
TNNC1_HUMAN
33-51
52-87
92-127
128-161
2
A:33-51
-
-
-
A:52-85
-
-
-
-
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
TNNC1_HUMAN
65-77
105-117
141-153
1
A:65-77
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rv5a_ (A:)
1b: SCOP_d3rv5b_ (B:)
1c: SCOP_d3rv5c_ (C:)
1d: SCOP_d3rv5d_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Troponin C
(53)
Human (Homo sapiens), cardiac isoform [TaxId: 9606]
(16)
1a
d3rv5a_
A:
1b
d3rv5b_
B:
1c
d3rv5c_
C:
1d
d3rv5d_
D:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (128 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
Header - Biol.Unit 3
Biol.Unit 4 (30 KB)
Header - Biol.Unit 4
Biol.Unit 5 (221 KB)
Header - Biol.Unit 5
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