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3RV3
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E.COLI BIOTIN CARBOXYLASE IN COMPLEX WITH TWO ADP AND ONE MG ION
Authors
:
C. Y. Chou, L. Tong
Date
:
05 May 11 (Deposition) - 18 May 11 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Y. Chou, L. Tong
Structural And Biochemical Studies On The Regulation Of Biotin Carboxylase By Substrate Inhibition And Dimerization
J. Biol. Chem. V. 286 24417 2011
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:82 , GLY A:83 , GLY A:162 , GLY A:163 , GLY A:164 , GLY A:165 , ARG A:167 , PHE A:193 , GLN A:237 , LYS A:238 , ASN A:290 , ARG A:292 , GLN A:294 , VAL A:295 , GLU A:296 , ARG A:338 , ASP A:382 , HOH A:547 , HOH A:561 , HOH A:699 , HOH A:747 , HOH A:758
BINDING SITE FOR RESIDUE ADP A 1000
2
AC2
SOFTWARE
LYS A:116 , LYS A:159 , GLY A:163 , GLY A:164 , GLY A:165 , GLY A:166 , MET A:169 , GLU A:201 , LYS A:202 , TYR A:203 , LEU A:204 , HIS A:209 , GLN A:233 , HIS A:236 , GLU A:276 , LEU A:278 , ILE A:287 , GLU A:288 , ILE A:437 , HOH A:547 , HOH A:668 , HOH A:684 , HOH A:736 , HOH A:758 , HOH A:804 , MG A:1004
BINDING SITE FOR RESIDUE ADP A 1002
3
AC3
SOFTWARE
GLU A:276 , GLU A:288 , HOH A:547 , HOH A:684 , HOH A:804 , ADP A:1002
BINDING SITE FOR RESIDUE MG A 1004
4
AC4
SOFTWARE
LYS B:116 , LYS B:159 , GLY B:164 , GLY B:165 , GLY B:166 , MET B:169 , GLU B:201 , LYS B:202 , TYR B:203 , LEU B:204 , HIS B:209 , GLN B:233 , HIS B:236 , GLU B:276 , LEU B:278 , ILE B:287 , GLU B:288 , ILE B:437 , HOH B:545 , HOH B:561 , HOH B:582 , HOH B:732 , MG B:1005
BINDING SITE FOR RESIDUE ADP B 1001
5
AC5
SOFTWARE
TYR B:82 , GLY B:83 , GLY B:162 , GLY B:163 , GLY B:164 , GLY B:165 , PHE B:193 , LYS B:238 , ASN B:290 , ARG B:292 , GLN B:294 , VAL B:295 , GLU B:296 , ARG B:338 , ASP B:382 , HOH B:510 , HOH B:523 , HOH B:543 , HOH B:641 , HOH B:651 , HOH B:732 , HOH B:771 , HOH B:807 , HOH B:821
BINDING SITE FOR RESIDUE ADP B 1003
6
AC6
SOFTWARE
GLU B:276 , GLU B:288 , HOH B:545 , HOH B:732 , ADP B:1001
BINDING SITE FOR RESIDUE MG B 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: BC (A:1-444,B:1-445)
2: CPSASE_1 (A:154-168,B:154-168)
3: CPSASE_2 (A:286-293,B:286-293)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BC
PS50979
Biotin carboxylation domain profile.
ACCC_ECOLI
1-445
2
A:1-444
B:1-445
2
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
ACCC_ECOLI
154-168
2
A:154-168
B:154-168
3
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
ACCC_ECOLI
286-293
2
A:286-293
B:286-293
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3rv3a3 (A:331-444)
1b: SCOP_d3rv3b3 (B:331-447)
2a: SCOP_d3rv3a2 (A:115-330)
2b: SCOP_d3rv3b2 (B:115-330)
3a: SCOP_d3rv3a1 (A:1C-114)
3b: SCOP_d3rv3b1 (B:1-114)
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Classes
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Folds
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
BC C-terminal domain-like
(40)
Protein domain
:
Biotin carboxylase (BC), C-domain
(25)
Escherichia coli [TaxId: 562]
(24)
1a
d3rv3a3
A:331-444
1b
d3rv3b3
B:331-447
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Biotin carboxylase (BC), domain 2
(25)
Escherichia coli [TaxId: 562]
(24)
2a
d3rv3a2
A:115-330
2b
d3rv3b2
B:115-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Biotin carboxylase (BC), N-terminal domain
(25)
Escherichia coli [TaxId: 562]
(24)
3a
d3rv3a1
A:1C-114
3b
d3rv3b1
B:1-114
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_CPSase_L_D2_3rv3B01 (B:115-324)
1b: PFAM_CPSase_L_D2_3rv3B02 (B:115-324)
2a: PFAM_Biotin_carb_C_3rv3B03 (B:336-441)
2b: PFAM_Biotin_carb_C_3rv3B04 (B:336-441)
3a: PFAM_CPSase_L_chain_3rv3B05 (B:1-110)
3b: PFAM_CPSase_L_chain_3rv3B06 (B:1-110)
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Clans
(
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Families
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)
Organisms
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)
(
)
Clan
:
ATP-grasp
(83)
Family
:
CPSase_L_D2
(25)
Escherichia coli (strain K12)
(16)
1a
CPSase_L_D2-3rv3B01
B:115-324
1b
CPSase_L_D2-3rv3B02
B:115-324
Clan
:
no clan defined [family: Biotin_carb_C]
(23)
Family
:
Biotin_carb_C
(23)
Escherichia coli (strain K12)
(14)
2a
Biotin_carb_C-3rv3B03
B:336-441
2b
Biotin_carb_C-3rv3B04
B:336-441
Clan
:
no clan defined [family: CPSase_L_chain]
(25)
Family
:
CPSase_L_chain
(25)
Escherichia coli (strain K12)
(16)
3a
CPSase_L_chain-3rv3B05
B:1-110
3b
CPSase_L_chain-3rv3B06
B:1-110
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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