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3RV2
Biol. Unit 2
Info
Asym.Unit (246 KB)
Biol.Unit 1 (240 KB)
Biol.Unit 2 (477 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE SYNTHETASE FROM MYCOBACTERIUM MARINUM
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
05 May 11 (Deposition) - 18 May 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Sam, S-Adenosylmethionine, Adomet, Adomet Synthase, Methyl Donor, Methylation, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:259 , HOH A:447 , HOH A:448 , HOH A:482 , HOH A:506 , HOH A:601
BINDING SITE FOR RESIDUE CA A 404
2
AC2
SOFTWARE
ASP A:394 , ASP A:397 , ASP A:398 , HOH A:454 , HOH A:455 , HOH A:478
BINDING SITE FOR RESIDUE CA A 405
3
AC3
SOFTWARE
HIS A:158 , ARG A:162 , GLY A:382 , ARG A:383 , THR A:384 , ASP A:385 , HOH A:464
BINDING SITE FOR RESIDUE EDO A 406
4
AC4
SOFTWARE
ARG A:41 , ALA A:43 , GLU A:58 , VAL A:59 , THR A:60 , LYS A:290
BINDING SITE FOR RESIDUE GOL A 407
5
AC5
SOFTWARE
ASP B:259 , HOH B:442 , HOH B:466 , HOH B:490 , HOH B:545 , HOH B:604 , HOH B:611
BINDING SITE FOR RESIDUE CA B 404
6
AC6
SOFTWARE
HIS B:158 , ARG B:162 , GLY B:382 , ARG B:383 , THR B:384 , ASP B:385 , HOH B:535
BINDING SITE FOR RESIDUE EDO B 405
7
AC7
SOFTWARE
ARG A:363 , ASP A:364 , ASP B:364 , ASP B:394 , LYS B:395
BINDING SITE FOR RESIDUE EDO B 406
8
AC8
SOFTWARE
ASP A:364 , ASP A:394 , LYS A:395 , ARG B:363 , ASP B:364
BINDING SITE FOR RESIDUE EDO B 407
9
AC9
SOFTWARE
ARG B:41 , VAL B:42 , ALA B:43 , GLU B:58 , VAL B:59 , THR B:60 , LYS B:290 , HOH B:485
BINDING SITE FOR RESIDUE GOL B 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ADOMET_SYNTHASE_1 (A:133-141,B:133-141)
2: ADOMET_SYNTHASE_2 (A:279-287,B:279-287)
;
View:
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADOMET_SYNTHASE_1
PS00376
S-adenosylmethionine synthase signature 1.
METK_MYCMM
131-141
4
A:133-141
B:133-141
2
ADOMET_SYNTHASE_2
PS00377
S-adenosylmethionine synthase signature 2.
METK_MYCMM
279-287
4
A:279-287
B:279-287
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3rv2a1 (A:5-106)
1b: SCOP_d3rv2a2 (A:133-252)
1c: SCOP_d3rv2a3 (A:253-403)
1d: SCOP_d3rv2b1 (B:5-106)
1e: SCOP_d3rv2b2 (B:133-252)
1f: SCOP_d3rv2b3 (B:253-403)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
S-adenosylmethionine synthetase
(23)
Superfamily
:
S-adenosylmethionine synthetase
(23)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Mycobacterium marinum [TaxId: 216594]
(1)
1a
d3rv2a1
A:5-106
1b
d3rv2a2
A:133-252
1c
d3rv2a3
A:253-403
1d
d3rv2b1
B:5-106
1e
d3rv2b2
B:133-252
1f
d3rv2b3
B:253-403
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_S_AdoMet_synt_C_3rv2B01 (B:253-392)
1b: PFAM_S_AdoMet_synt_C_3rv2B02 (B:253-392)
2a: PFAM_S_AdoMet_synt_M_3rv2B03 (B:133-251)
2b: PFAM_S_AdoMet_synt_M_3rv2B04 (B:133-251)
3a: PFAM_S_AdoMet_synt_N_3rv2B05 (B:5-106)
3b: PFAM_S_AdoMet_synt_N_3rv2B06 (B:5-106)
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Clans
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)
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)
Clan
:
no clan defined [family: S-AdoMet_synt_C]
(16)
Family
:
S-AdoMet_synt_C
(16)
Mycobacterium marinum (strain ATCC BAA-535 / M)
(1)
1a
S-AdoMet_synt_C-3rv2B01
B:253-392
1b
S-AdoMet_synt_C-3rv2B02
B:253-392
Clan
:
no clan defined [family: S-AdoMet_synt_M]
(16)
Family
:
S-AdoMet_synt_M
(16)
Mycobacterium marinum (strain ATCC BAA-535 / M)
(1)
2a
S-AdoMet_synt_M-3rv2B03
B:133-251
2b
S-AdoMet_synt_M-3rv2B04
B:133-251
Clan
:
no clan defined [family: S-AdoMet_synt_N]
(16)
Family
:
S-AdoMet_synt_N
(16)
Mycobacterium marinum (strain ATCC BAA-535 / M)
(1)
3a
S-AdoMet_synt_N-3rv2B05
B:5-106
3b
S-AdoMet_synt_N-3rv2B06
B:5-106
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (240 KB)
Header - Biol.Unit 1
Biol.Unit 2 (477 KB)
Header - Biol.Unit 2
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