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3RUW
Biol. Unit 1
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Asym.Unit (661 KB)
Biol.Unit 1, α-C (2.5 MB)
Biol.Unit 1 (2.5 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CPN-RLS IN COMPLEX WITH ADP-ALFX FROM METHANOCOCCUS MARIPALUDIS
Authors
:
J. H. Pereira, C. Y. Ralston, N. R. Douglas, R. Kumar, R. P. Mcandrew, K. M J. A. King, J. Frydman, P. D. Adams
Date
:
05 May 11 (Deposition) - 04 Jan 12 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (4x)
Keywords
:
Double-Ring, Protein Folding Machinery, Group Ii Chaperonin, Atp Binding, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Pereira, C. Y. Ralston, N. R. Douglas, R. Kumar, T. Lopez, R. P. Mcandrew, K. M. Knee, J. A. King, J. Frydman, P. D. Adams
Mechanism Of Nucleotide Sensing In Group Ii Chaperonins.
Embo J. V. 31 731 2012
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Hetero Components
(3, 64)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
2c: ALUMINUM FLUORIDE (AF3c)
2d: ALUMINUM FLUORIDE (AF3d)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
16
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
AF3
16
Ligand/Ion
ALUMINUM FLUORIDE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
32
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:91 , ADP A:545 , AF3 A:546 , HOH A:549 , HOH A:553
BINDING SITE FOR RESIDUE MG A 544
02
AC2
SOFTWARE
THR A:38 , LEU A:39 , GLY A:40 , PRO A:41 , ASN A:59 , ASP A:91 , GLY A:92 , THR A:93 , THR A:94 , THR A:95 , GLY A:160 , GLY A:403 , GLY A:404 , VAL A:488 , GLU A:490 , MG A:544 , AF3 A:546 , HOH A:551 , HOH A:552 , HOH A:553 , HOH A:570 , HOH A:577
BINDING SITE FOR RESIDUE ADP A 545
03
AC3
SOFTWARE
ASN A:59 , ASP A:60 , GLY A:61 , ASP A:91 , GLY A:92 , THR A:93 , THR A:94 , ASP A:386 , MG A:544 , ADP A:545 , HOH A:551 , HOH A:580
BINDING SITE FOR RESIDUE AF3 A 546
04
AC4
SOFTWARE
LYS A:216 , ARG A:307 , ARG A:308
BINDING SITE FOR RESIDUE SO4 A 547
05
AC5
SOFTWARE
ARG A:218 , LYS A:225 , LYS B:319
BINDING SITE FOR RESIDUE SO4 A 548
06
AC6
SOFTWARE
ASP B:91 , ADP B:545 , AF3 B:546 , HOH B:550 , HOH B:568
BINDING SITE FOR RESIDUE MG B 544
07
AC7
SOFTWARE
THR B:38 , LEU B:39 , GLY B:40 , PRO B:41 , ASN B:59 , ASP B:91 , GLY B:92 , THR B:93 , THR B:94 , THR B:95 , GLY B:160 , GLY B:403 , GLY B:404 , VAL B:488 , GLU B:490 , MG B:544 , AF3 B:546 , HOH B:552 , HOH B:564 , HOH B:568 , HOH B:573
BINDING SITE FOR RESIDUE ADP B 545
08
AC8
SOFTWARE
ASN B:59 , ASP B:60 , GLY B:61 , ASP B:91 , GLY B:92 , THR B:93 , THR B:94 , LYS B:161 , MG B:544 , ADP B:545 , HOH B:549 , HOH B:550 , HOH B:563
BINDING SITE FOR RESIDUE AF3 B 546
09
AC9
SOFTWARE
LYS B:216 , ARG B:307 , ARG B:308
BINDING SITE FOR RESIDUE SO4 B 547
10
BC1
SOFTWARE
ARG B:218 , LYS B:225 , LYS C:319
BINDING SITE FOR RESIDUE SO4 B 548
11
BC2
SOFTWARE
ASP C:91 , ADP C:545 , AF3 C:546 , HOH C:549 , HOH C:569
BINDING SITE FOR RESIDUE MG C 544
12
BC3
SOFTWARE
THR C:38 , LEU C:39 , GLY C:40 , PRO C:41 , ASP C:91 , GLY C:92 , THR C:93 , THR C:94 , THR C:95 , THR C:156 , GLY C:160 , GLY C:403 , GLY C:404 , VAL C:488 , GLU C:490 , MG C:544 , AF3 C:546 , HOH C:550 , HOH C:551 , HOH C:569 , HOH C:580 , HOH C:581
BINDING SITE FOR RESIDUE ADP C 545
13
BC4
SOFTWARE
ASN C:59 , ASP C:60 , GLY C:61 , ASP C:91 , GLY C:92 , THR C:93 , THR C:94 , LYS C:161 , MG C:544 , ADP C:545 , HOH C:549 , HOH C:550 , HOH C:578 , HOH C:579
BINDING SITE FOR RESIDUE AF3 C 546
14
BC5
SOFTWARE
LYS C:216 , ARG C:307 , ARG C:308
BINDING SITE FOR RESIDUE SO4 C 547
15
BC6
SOFTWARE
ARG C:218 , LYS C:225 , LYS D:319
BINDING SITE FOR RESIDUE SO4 C 548
16
BC7
SOFTWARE
ASP D:91 , ADP D:545 , AF3 D:546 , HOH D:549 , HOH D:558
BINDING SITE FOR RESIDUE MG D 544
17
BC8
SOFTWARE
THR D:38 , LEU D:39 , GLY D:40 , PRO D:41 , ASN D:59 , ASP D:91 , GLY D:92 , THR D:93 , THR D:94 , THR D:95 , GLY D:160 , GLY D:403 , GLY D:404 , VAL D:488 , GLU D:490 , MG D:544 , AF3 D:546 , HOH D:556 , HOH D:558 , HOH D:564 , HOH D:567
BINDING SITE FOR RESIDUE ADP D 545
18
BC9
SOFTWARE
ASN D:59 , ASP D:60 , GLY D:61 , ASP D:91 , GLY D:92 , THR D:93 , THR D:94 , ASP D:386 , MG D:544 , ADP D:545 , HOH D:549 , HOH D:562 , HOH D:563
BINDING SITE FOR RESIDUE AF3 D 546
19
CC1
SOFTWARE
LYS D:216 , ARG D:307 , ARG D:308
BINDING SITE FOR RESIDUE SO4 D 547
20
CC2
SOFTWARE
ARG D:218 , LYS D:225
BINDING SITE FOR RESIDUE SO4 D 548
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asymmetric Unit 3
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (661 KB)
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