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3RSQ
Biol. Unit 1
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Asym.Unit (167 KB)
Biol.Unit 1, α-C (1.2 MB)
Biol.Unit 1 (1.2 MB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TM0922, A FUSION OF A DOMAIN OF UNKNOWN FUNCTION AND ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE FROM THERMOTOGA MARITIMA SOAKED WITH NADH
Authors
:
I. A. Shumilin, M. Cymborowski, S. A. Lesley, W. Minor
Date
:
02 May 11 (Deposition) - 22 Jun 11 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (8x)
Keywords
:
Unknown Function, Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. A. Shumilin, M. Cymborowski, O. Chertihin, K. N. Jha, J. C. Herr, S. A. Lesley, A. Joachimiak, W. Minor
Identification Of Unknown Protein Function Using Metabolite Cocktail Screening.
Structure V. 20 1715 2012
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
3a: BETA-6-HYDROXY-1,4,5,6-TETRHYDRONI... (NAXa)
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No.
Name
Count
Type
Full Name
1
K
-1
Ligand/Ion
POTASSIUM ION
2
NAI
8
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
NAX
8
Ligand/Ion
BETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINEDINUCLEOTIDE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:52 , ASP A:114 , PHE A:117 , VAL A:146 , VAL A:148 , SER A:150
BINDING SITE FOR RESIDUE K A 491
2
AC2
SOFTWARE
GLY A:50 , ASN A:51 , ASN A:52 , ASP A:55 , PHE A:117 , GLY A:118 , THR A:119 , GLY A:120 , LEU A:121 , ARG A:122 , GLY A:123 , GLU A:124 , TYR A:129 , ASP A:147 , LYS A:375 , HOH A:496 , HOH A:539 , HOH A:562 , HOH A:580 , HOH A:583
BINDING SITE FOR RESIDUE NAI A 492
3
AC3
SOFTWARE
HIS A:228 , LYS A:229 , TYR A:244 , ALA A:247 , PRO A:280 , GLU A:281 , LEU A:282 , GLY A:315 , PRO A:316 , GLY A:317 , ALA A:343 , ASP A:344 , ASN A:347 , HIS A:366 , PRO A:367 , GLY A:368 , GLU A:369 , GLY A:428 , ASP A:431 , HOH A:495 , HOH A:503 , HOH A:509 , HOH A:551 , HOH A:569 , HOH A:575 , HOH A:576
BINDING SITE FOR RESIDUE NAX A 493
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(4, 32)
Info
All PROSITE Patterns/Profiles
1: YJEF_N (A:1-204)
2: YJEF_C_3 (A:212-488)
3: YJEF_C_1 (A:311-321)
4: YJEF_C_2 (A:427-437)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
YJEF_N
PS51385
YjeF N-terminal domain profile.
NNR_THEMA
1-204
8
A:1-204
2
YJEF_C_3
PS51383
YjeF C-terminal domain profile.
NNR_THEMA
212-488
8
A:212-488
3
YJEF_C_1
PS01049
YjeF C-terminal domain signature 1.
NNR_THEMA
311-321
8
A:311-321
4
YJEF_C_2
PS01050
YjeF C-terminal domain signature 2.
NNR_THEMA
427-437
8
A:427-437
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3rsqa2 (A:212-489)
2a: SCOP_d3rsqa1 (A:0-211)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
YjeF C-terminal domain-like
(31)
Protein domain
:
Hypothetical protein TM0922, C-terminal domain
(21)
Thermotoga maritima [TaxId: 2336]
(21)
1a
d3rsqa2
A:212-489
Fold
:
YjeF N-terminal domain-like
(30)
Superfamily
:
YjeF N-terminal domain-like
(30)
Family
:
YjeF N-terminal domain-like
(22)
Protein domain
:
Hypothetical protein TM0922, N-terminal domain
(21)
Thermotoga maritima [TaxId: 2336]
(21)
2a
d3rsqa1
A:0-211
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (167 KB)
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Biol.Unit 1 (1.2 MB)
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