PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3RSI
Asym. Unit
Info
Asym.Unit (232 KB)
Biol.Unit 1 (227 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE STRUCTURE OF A PUTATIVE ENOYL-COA HYDRATASE/ISOMERASE FROM MYCOBACTERIUM ABSCESSUS ATCC 19977 / DSM 44196
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
02 May 11 (Deposition) - 11 May 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
[
close entry info
]
Hetero Components
(2, 26)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: IODIDE ION (IODa)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
IOD
25
Ligand/Ion
IODIDE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:127 , THR A:170 , PHE A:172 , GLU A:224 , ARG A:227 , HOH A:293
BINDING SITE FOR RESIDUE GOL A 262
02
AC2
SOFTWARE
GLY C:13
BINDING SITE FOR RESIDUE IOD C 262
03
AC3
SOFTWARE
ARG B:199 , ARG B:202 , HOH B:399
BINDING SITE FOR RESIDUE IOD B 262
04
AC4
SOFTWARE
VAL B:184 , PRO B:185
BINDING SITE FOR RESIDUE IOD B 263
05
AC5
SOFTWARE
ALA C:40 , GLU C:43 , HOH C:320
BINDING SITE FOR RESIDUE IOD C 264
06
AC6
SOFTWARE
PRO B:134 , VAL C:64
BINDING SITE FOR RESIDUE IOD C 265
07
AC7
SOFTWARE
ARG B:138 , HOH B:749
BINDING SITE FOR RESIDUE IOD B 265
08
AC8
SOFTWARE
GLU C:6 , ASN C:32 , GLN C:36
BINDING SITE FOR RESIDUE IOD C 266
09
AC9
SOFTWARE
HIS A:24
BINDING SITE FOR RESIDUE IOD B 266
10
BC1
SOFTWARE
HOH A:310 , GLN B:153 , HOH C:290
BINDING SITE FOR RESIDUE IOD B 268
11
BC2
SOFTWARE
HOH A:278 , HOH B:281 , GLN C:153 , HOH C:701
BINDING SITE FOR RESIDUE IOD C 267
12
BC3
SOFTWARE
GLY B:66
BINDING SITE FOR RESIDUE IOD B 269
13
BC4
SOFTWARE
PRO C:134 , HOH C:523
BINDING SITE FOR RESIDUE IOD C 268
14
BC5
SOFTWARE
GLY A:65 , LEU A:110 , PRO A:134 , ARG A:138 , HOH A:442
BINDING SITE FOR RESIDUE IOD A 263
15
BC6
SOFTWARE
HOH C:638
BINDING SITE FOR RESIDUE IOD C 270
16
BC7
SOFTWARE
GLU B:43
BINDING SITE FOR RESIDUE IOD B 270
17
BC8
SOFTWARE
SER A:35 , HOH A:605 , HOH B:440
BINDING SITE FOR RESIDUE IOD A 264
18
BC9
SOFTWARE
ARG A:5 , LEU A:8 , ASN A:21
BINDING SITE FOR RESIDUE IOD A 265
19
CC1
SOFTWARE
GLY A:187 , HOH A:642 , HOH A:644
BINDING SITE FOR RESIDUE IOD A 267
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3rsia_ (A:)
1b: SCOP_d3rsib_ (B:)
1c: SCOP_d3rsic_ (C:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
automated matches
(96)
Protein domain
:
automated matches
(96)
Mycobacterium abscessus [TaxId: 561007]
(5)
1a
d3rsia_
A:
1b
d3rsib_
B:
1c
d3rsic_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_ECH_3rsiC01 (C:8-253)
1b: PFAM_ECH_3rsiC02 (C:8-253)
1c: PFAM_ECH_3rsiC03 (C:8-253)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
ECH
(52)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(4)
1a
ECH-3rsiC01
C:8-253
1b
ECH-3rsiC02
C:8-253
1c
ECH-3rsiC03
C:8-253
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (232 KB)
Header - Asym.Unit
Biol.Unit 1 (227 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3RSI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
