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3RSB
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (32 KB)
Biol.Unit 4 (32 KB)
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(1)
Title
:
STRUCTURE OF THE ARCHAEAL GTP:ADOCBI-P GUANYLYLTRANSFERASE (COBY) FROM METHANOCALDOCOCCUS JANNASCHII
Authors
:
S. A. Newmister, M. M. Otte, J. C. Escalante-Semerena, I. Rayment
Date
:
02 May 11 (Deposition) - 18 May 11 (Release) - 22 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Pyrophosphorylase Binding Motif, Pyrophosphorylase, Transferase
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Reference
:
S. A. Newmister, M. M. Otte, J. C. Escalante-Semerena, I. Rayment
Structure And Mutational Analysis Of The Archaeal Gtp:Adocbi-P Guanylyltransferase (Coby) From Methanocaldococcus Jannaschii: Insights Into Gtp Binding An Dimerization.
Biochemistry V. 50 5301 2011
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Hetero Components
(2, 28)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
1c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
1d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
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No.
Name
Count
Type
Full Name
1
GTP
4
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MSE A:6 , ALA A:7 , THR A:12 , ARG A:13 , LYS A:19 , SER A:50 , GLU A:82 , SER A:99 , SER A:100 , ASN A:179 , HOH A:202 , HOH A:209 , HOH A:215
BINDING SITE FOR RESIDUE GTP A 197
2
AC2
SOFTWARE
MSE B:6 , ALA B:7 , GLY B:8 , GLY B:9 , LYS B:10 , GLY B:11 , THR B:12 , ARG B:13 , LYS B:19 , GLU B:82 , SER B:99 , SER B:100 , ASP B:101 , ASN B:179 , HOH B:203 , HOH B:213 , HOH B:222
BINDING SITE FOR RESIDUE GTP B 197
3
AC3
SOFTWARE
MSE C:6 , ALA C:7 , GLY C:8 , GLY C:9 , LYS C:10 , GLY C:11 , THR C:12 , ARG C:13 , LYS C:19 , SER C:99 , SER C:100 , ASP C:101 , ASN C:179 , HOH C:198 , HOH C:202
BINDING SITE FOR RESIDUE GTP C 197
4
AC4
SOFTWARE
MSE D:6 , ALA D:7 , GLY D:8 , GLY D:9 , LYS D:10 , GLY D:11 , THR D:12 , ARG D:13 , LYS D:19 , ASP D:74 , SER D:99 , SER D:100 , ASN D:179 , HOH D:215
BINDING SITE FOR RESIDUE GTP D 197
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NTP_transf_3_3rsbD01 (D:3-184)
1b: PFAM_NTP_transf_3_3rsbD02 (D:3-184)
1c: PFAM_NTP_transf_3_3rsbD03 (D:3-184)
1d: PFAM_NTP_transf_3_3rsbD04 (D:3-184)
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Clan
:
GT-A
(172)
Family
:
NTP_transf_3
(13)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
NTP_transf_3-3rsbD01
D:3-184
1b
NTP_transf_3-3rsbD02
D:3-184
1c
NTP_transf_3-3rsbD03
D:3-184
1d
NTP_transf_3-3rsbD04
D:3-184
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Asym.Unit (126 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Biol.Unit 3 (32 KB)
Header - Biol.Unit 3
Biol.Unit 4 (32 KB)
Header - Biol.Unit 4
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