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3RRM
Asym. Unit
Info
Asym.Unit (359 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
S. CEREVISIAE DBP5 L327V BOUND TO NUP159, GLE1 H337R, IP6 AND ADP
Authors
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K
Date
:
29 Apr 11 (Deposition) - 18 May 11 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Reca, Dead-Box, Heat-Repeat, Beta-Propeller, Atpase, Helicase, Mrna- Export, Nuclear Pore, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Montpetit, N. D. Thomsen, K. J. Helmke, M. A. Seeliger, J. M. Berger, K. Weis
A Conserved Mechanism Of Dead-Box Atpase Activation By Nucleoporins And Insp6 In Mrna Export.
Nature V. 472 238 2011
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: INOSITOL HEXAKISPHOSPHATE (IHPa)
3a: MAGNESIUM ION (MGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
IHP
1
Ligand/Ion
INOSITOL HEXAKISPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:112 , LYS A:114 , SER A:116 , GLN A:119 , GLN A:139 , SER A:140 , GLY A:141 , THR A:142 , GLY A:143 , LYS A:144 , THR A:145 , ALA A:146 , ASP A:395 , PHE A:430
BINDING SITE FOR RESIDUE ADP A 1
2
AC2
SOFTWARE
LYS A:477 , LYS A:481 , MG B:2 , LYS B:264 , LYS B:333 , ARG B:337 , ARG B:374 , LYS B:377 , LYS B:378 , LYS B:401
BINDING SITE FOR RESIDUE IHP B 1
3
AC3
SOFTWARE
IHP B:1
BINDING SITE FOR RESIDUE MG B 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DEAD_ATP_HELICASE (A:237-245)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
DBP5_YEAST
237-245
1
A:237-245
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (C:1-381 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YIL115C
1
YIL115C.1
IX:148706-144324
4383
NU159_YEAST
1-1460
1460
1
C:1-381 (gaps)
381
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3rrmc_ (C:)
2a: SCOP_d3rrma1 (A:98-286)
2b: SCOP_d3rrma2 (A:299-482)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Nucleoporin domain
(3)
Family
:
Nucleoporin domain
(3)
Protein domain
:
automated matches
(1)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d3rrmc_
C:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
2a
d3rrma1
A:98-286
2b
d3rrma2
A:299-482
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_DEAD_3rrmA01 (A:116-281)
2a: PFAM_Helicase_C_3rrmA02 (A:348-431)
3a: PFAM_GLE1_3rrmB01 (B:256-502)
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Clans
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)
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
1a
DEAD-3rrmA01
A:116-281
Family
:
Helicase_C
(51)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(14)
2a
Helicase_C-3rrmA02
A:348-431
Clan
:
no clan defined [family: GLE1]
(4)
Family
:
GLE1
(4)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
3a
GLE1-3rrmB01
B:256-502
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Asymmetric Unit 1
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Asym.Unit (359 KB)
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