PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3RR3
Biol. Unit 2
Info
Asym.Unit (390 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (193 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF (R)-FLURBIPROFEN BOUND TO MCOX-2
Authors
:
K. C. Duggan, D. J. Hermanson, J. Musee, J. J. Prusakiewicz, J. Scheib, B. D. Carter, S. Banerjee, J. A. Oates, L. J. Marnett
Date
:
28 Apr 11 (Deposition) - 09 Nov 11 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Flurbiprofen, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Duggan, D. J. Hermanson, J. Musee, J. J. Prusakiewicz, J. L. Scheib, B. D. Carter, S. Banerjee, J. A. Oates, L. J. Marnett
(R)-Profens Are Substrate-Selective Inhibitors Of Endocannabinoid Oxygenation By Cox-2.
Nat. Chem. Biol. V. 7 803 2011
[
close entry info
]
Hetero Components
(4, 15)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
2a: (2R)-2-(3-FLUORO-4-PHENYL-PHENYL)P... (FLRa)
2b: (2R)-2-(3-FLUORO-4-PHENYL-PHENYL)P... (FLRb)
2c: (2R)-2-(3-FLUORO-4-PHENYL-PHENYL)P... (FLRc)
2d: (2R)-2-(3-FLUORO-4-PHENYL-PHENYL)P... (FLRd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
3
Ligand/Ion
B-OCTYLGLUCOSIDE
2
FLR
2
Ligand/Ion
(2R)-2-(3-FLUORO-4-PHENYL-PHENYL)PROPANOIC ACID
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(15, 15)
Info
All Sites
01: BC7 (SOFTWARE)
02: BC8 (SOFTWARE)
03: BC9 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: CC8 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC7
SOFTWARE
SER C:38 , PRO C:40 , TYR C:55 , GLU C:67 , ASN C:68 , HOH C:593 , HOH C:594 , HOH C:595
BINDING SITE FOR RESIDUE NAG C 661
02
BC8
SOFTWARE
NAG C:9 , GLU C:140 , ASN C:144 , TYR C:147 , ARG C:216
BINDING SITE FOR RESIDUE NAG C 671
03
BC9
SOFTWARE
GLN C:406 , ASN C:410 , SER C:412 , HOH C:633
BINDING SITE FOR RESIDUE NAG C 681
04
CC1
SOFTWARE
ARG C:120 , VAL C:349 , LEU C:352 , TYR C:355 , LEU C:359 , TYR C:385 , TRP C:387 , VAL C:523 , GLY C:526 , ALA C:527 , SER C:530
BINDING SITE FOR RESIDUE FLR C 700
05
CC2
SOFTWARE
ALA C:199 , ALA C:202 , GLN C:203 , HIS C:207 , THR C:212 , HIS C:214 , VAL C:295 , ASN C:382 , HIS C:386 , HIS C:388 , LEU C:391
BINDING SITE FOR RESIDUE HEM C 682
06
CC3
SOFTWARE
LYS C:180 , LEU C:183 , ARG C:184 , ARG C:185 , ARG C:438 , ILE C:442 , GLU C:486 , GLU C:490 , GLU D:179 , ARG D:184 , ARG D:185 , ILE D:442
BINDING SITE FOR RESIDUE BOG C 3
07
CC4
SOFTWARE
PRO C:84 , TYR C:115 , SER C:119 , GLU C:524
BINDING SITE FOR RESIDUE BOG C 6
08
CC5
SOFTWARE
ARG C:216 , HOH C:637 , NAG C:671
BINDING SITE FOR RESIDUE NAG C 9
09
CC6
SOFTWARE
SER D:38 , TYR D:55 , GLU D:67 , ASN D:68 , HOH D:603 , HOH D:640
BINDING SITE FOR RESIDUE NAG D 661
10
CC7
SOFTWARE
NAG D:9 , GLU D:140 , ASN D:144 , TYR D:147 , ARG D:216
BINDING SITE FOR RESIDUE NAG D 671
11
CC8
SOFTWARE
VAL D:116 , ARG D:120 , VAL D:349 , LEU D:352 , TYR D:355 , TYR D:385 , TRP D:387 , VAL D:523 , GLY D:526 , ALA D:527 , SER D:530
BINDING SITE FOR RESIDUE FLR D 700
12
CC9
SOFTWARE
ASN D:410 , SER D:412 , ILE D:413
BINDING SITE FOR RESIDUE NAG D 681
13
DC1
SOFTWARE
ALA D:199 , GLN D:203 , HIS D:207 , THR D:212 , HIS D:214 , ASN D:382 , TYR D:385 , HIS D:386 , TRP D:387 , HIS D:388 , LEU D:391 , VAL D:447 , HOH D:642
BINDING SITE FOR RESIDUE HEM D 682
14
DC2
SOFTWARE
LYS D:83 , PRO D:84 , TYR D:115 , SER D:119 , ARG D:120 , LEU D:123 , GLU D:524
BINDING SITE FOR RESIDUE BOG D 3
15
DC3
SOFTWARE
ARG D:216 , NAG D:671
BINDING SITE FOR RESIDUE NAG D 9
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (C:110-583,D:110-583)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
-
-
C:110-583
D:110-583
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (390 KB)
Header - Asym.Unit
Biol.Unit 1 (192 KB)
Header - Biol.Unit 1
Biol.Unit 2 (193 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3RR3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help