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Getting 'Exon' information from database.
3RNU
Asym. Unit
Info
Asym.Unit (298 KB)
Biol.Unit 1 (289 KB)
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(1)
Title
:
STRUCTURAL BASIS OF CYTOSOLIC DNA SENSING BY INNATE IMMUNE RECEPTORS
Authors
:
T. C. Jin, T. Xiao
Date
:
22 Apr 11 (Deposition) - 25 Apr 12 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,K,L
Biol. Unit 1: A,B,C,D,K,L (1x)
Keywords
:
Ob Fold, Dna Binding, Cytosolic Dna Sensor, Cytosolic, Immune Response-Dna Complex, Transcription Activator-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jin, A. Perry, J. Jiang, P. Smith, J. A. Curry, L. Unterholzner, Z. Jiang, G. Horvath, V. A. Rathinam, R. W. Johnstone, V. Hornung, E. Latz, A. G. Bowie, K. A. Fitzgerald, T. S. Xiao
Structures Of The Hin Domain:Dna Complexes Reveal Ligand Binding And Activation Mechanisms Of The Aim2 Inflammasome And Ifi16 Receptor.
Immunity V. 36 561 2012
[
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
5
Ligand/Ion
FORMIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:721 , HIS A:757 , ILE A:758
BINDING SITE FOR RESIDUE FMT A 6
2
AC2
SOFTWARE
PRO B:646 , THR B:648 , LEU B:649
BINDING SITE FOR RESIDUE EDO B 2
3
AC3
SOFTWARE
ARG B:721 , LEU B:722 , HIS B:757 , ILE B:758
BINDING SITE FOR RESIDUE FMT B 4
4
AC4
SOFTWARE
ARG C:721 , LEU C:722 , HIS C:757 , ILE C:758
BINDING SITE FOR RESIDUE FMT C 3
5
AC5
SOFTWARE
HOH D:34 , PRO D:646 , THR D:648
BINDING SITE FOR RESIDUE EDO D 1
6
AC6
SOFTWARE
PHE D:589 , ARG D:721 , LEU D:722
BINDING SITE FOR RESIDUE FMT D 5
7
AC7
SOFTWARE
ARG D:638 , ASN D:639
BINDING SITE FOR RESIDUE FMT D 7
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029491 (T723S, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029491
T
723
S
IF16_HUMAN
Polymorphism
6940
A/B/C/D
T
723
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(3, 12)
Info
All Exons
Exon 1.13a (A:572-695 | B:570-695 | C:572-695 ...)
Exon 1.13e (A:696-759 | B:696-759 | C:696-759 ...)
Exon 1.14b (A:760-770 (gaps) | B:760-770 (gaps...)
View:
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Label:
All Exon Boundaries
1: Boundary 1.12/1.13a
2: Boundary 1.13a/1.13e
3: Boundary 1.13e/1.14b
4: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4c
ENST00000295809
4c
ENSE00001446388
chr1:
158979712-158979951
240
IF16_HUMAN
-
0
0
-
-
1.5
ENST00000295809
5
ENSE00002197956
chr1:
158984451-158984735
285
IF16_HUMAN
1-89
89
0
-
-
1.6b
ENST00000295809
6b
ENSE00002145190
chr1:
158985662-158985777
116
IF16_HUMAN
89-127
39
0
-
-
1.7b
ENST00000295809
7b
ENSE00001713738
chr1:
158986323-158986490
168
IF16_HUMAN
128-183
56
0
-
-
1.8b
ENST00000295809
8b
ENSE00001756224
chr1:
158988019-158988441
423
IF16_HUMAN
184-324
141
0
-
-
1.9
ENST00000295809
9
ENSE00001745832
chr1:
158990131-158990319
189
IF16_HUMAN
325-387
63
0
-
-
1.10
ENST00000295809
10
ENSE00001775551
chr1:
159002314-159002481
168
IF16_HUMAN
388-443
56
0
-
-
1.11
ENST00000295809
11
ENSE00001604845
chr1:
159015087-159015254
168
IF16_HUMAN
444-499
56
0
-
-
1.12
ENST00000295809
12
ENSE00001647098
chr1:
159019222-159019389
168
IF16_HUMAN
500-555
56
0
-
-
1.13a
ENST00000295809
13a
ENSE00001285404
chr1:
159021469-159021888
420
IF16_HUMAN
556-695
140
4
A:572-695
B:570-695
C:572-695
D:572-695
124
126
124
124
1.13e
ENST00000295809
13e
ENSE00001076041
chr1:
159023323-159023514
192
IF16_HUMAN
696-759
64
4
A:696-759
B:696-759
C:696-759
D:696-759
64
64
64
64
1.14b
ENST00000295809
14b
ENSE00001285450
chr1:
159024611-159024938
328
IF16_HUMAN
760-785
26
4
A:760-770 (gaps)
B:760-770 (gaps)
C:760-770 (gaps)
D:760-770 (gaps)
17
17
17
17
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3rnua1 (A:572-672)
1b: SCOP_d3rnua2 (A:673-770)
1c: SCOP_d3rnub1 (B:570-672)
1d: SCOP_d3rnub2 (B:673-770)
1e: SCOP_d3rnuc1 (C:572-672)
1f: SCOP_d3rnuc2 (C:673-770)
1g: SCOP_d3rnud1 (D:572-672)
1h: SCOP_d3rnud2 (D:673-770)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
HIN-200/IF120x domain
(5)
Protein domain
:
Gamma-interferon-inducible protein Ifi-16
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3rnua1
A:572-672
1b
d3rnua2
A:673-770
1c
d3rnub1
B:570-672
1d
d3rnub2
B:673-770
1e
d3rnuc1
C:572-672
1f
d3rnuc2
C:673-770
1g
d3rnud1
D:572-672
1h
d3rnud2
D:673-770
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Chain C
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Chain K
Chain L
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (298 KB)
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