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Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IGLUR2 LIGAND BINDING DOMAIN WITH SYMMETRIC SULFONAMIDE CONTAINING POTENTIATOR
Authors
:
D. E. Timm
Date
:
22 Apr 11 (Deposition) - 25 May 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Iglur2 Ligand Binding Domain, Membrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Timm, M. Benveniste, A. M. Weeks, E. S. Nisenbaum, K. M. Partin
Structural And Functional Analysis Of Two New Positive Allosteric Modulators Of Glua2 Desensitization And Deactivation.
Mol. Pharmacol. V. 80 267 2011
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: GLUTAMIC ACID (GLUa)
1b: GLUTAMIC ACID (GLUb)
1c: GLUTAMIC ACID (GLUc)
2a: N,N'-(BENZENE-1,4-DIYLDIETHANE-2,1... (RNNa)
2b: N,N'-(BENZENE-1,4-DIYLDIETHANE-2,1... (RNNb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GLU
3
Mod. Amino Acid
GLUTAMIC ACID
2
RNN
2
Ligand/Ion
N,N'-(BENZENE-1,4-DIYLDIETHANE-2,1-DIYL)DIPROPANE-2-SULFONAMIDE
3
ZN
5
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:104 , PRO A:105 , SER A:108 , LYS A:218 , GLY A:219 , LEU A:239 , LYS C:104 , PRO C:105 , LYS C:218 , GLY C:219
BINDING SITE FOR RESIDUE RNN A 280
02
AC2
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , HOH A:286 , HOH A:287 , HOH A:294
BINDING SITE FOR RESIDUE GLU A 281
03
AC3
SOFTWARE
GLU A:42 , HIS A:46 , GLU B:166
BINDING SITE FOR RESIDUE ZN A 282
04
AC4
SOFTWARE
LYS B:104 , PRO B:105 , SER B:108 , LYS B:218 , GLY B:219 , LEU B:239 , ASN B:242
BINDING SITE FOR RESIDUE RNN B 280
05
AC5
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , LEU B:138 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , HOH B:288 , HOH B:304 , HOH B:311
BINDING SITE FOR RESIDUE GLU B 281
06
AC6
SOFTWARE
HIS B:23 , GLU B:30 , HIS C:23 , GLU C:24
BINDING SITE FOR RESIDUE ZN B 282
07
AC7
SOFTWARE
GLU A:166 , GLU B:42 , HIS B:46 , LEU B:241 , HOH B:478
BINDING SITE FOR RESIDUE ZN B 283
08
AC8
SOFTWARE
TYR C:61 , PRO C:89 , LEU C:90 , THR C:91 , ARG C:96 , LEU C:138 , GLY C:141 , SER C:142 , THR C:143 , GLU C:193 , HOH C:283 , HOH C:297 , HOH C:321
BINDING SITE FOR RESIDUE GLU C 280
09
AC9
SOFTWARE
HIS A:23 , ASP C:65 , HOH C:490 , HOH C:491
BINDING SITE FOR RESIDUE ZN C 281
10
BC1
SOFTWARE
GLU C:42 , LYS C:45 , HIS C:46 , HOH C:806
BINDING SITE FOR RESIDUE ZN C 282
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3rnna_ (A:)
1b: SCOP_d3rnnb_ (B:)
1c: SCOP_d3rnnc_ (C:)
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Protein Domains
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(
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3rnna_
A:
1b
d3rnnb_
B:
1c
d3rnnc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Lig_chan_3rnnC01 (C:120-280)
1b: PFAM_Lig_chan_3rnnC02 (C:120-280)
1c: PFAM_Lig_chan_3rnnC03 (C:120-280)
2a: PFAM_Lig_chan_Glu_bd_3rnnC04 (C:15-80)
2b: PFAM_Lig_chan_Glu_bd_3rnnC05 (C:15-80)
2c: PFAM_Lig_chan_Glu_bd_3rnnC06 (C:15-80)
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Clans
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Homo sapiens (Human)
(6)
1a
Lig_chan-3rnnC01
C:120-280
1b
Lig_chan-3rnnC02
C:120-280
1c
Lig_chan-3rnnC03
C:120-280
Clan
:
PBP
(391)
Family
:
Lig_chan-Glu_bd
(91)
Homo sapiens (Human)
(5)
2a
Lig_chan-Glu_bd-3rnnC04
C:15-80
2b
Lig_chan-Glu_bd-3rnnC05
C:15-80
2c
Lig_chan-Glu_bd-3rnnC06
C:15-80
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Asymmetric Unit 1
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