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3RN5
Biol. Unit 1
Info
Asym.Unit (345 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (169 KB)
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(1)
Title
:
STRUCTURAL BASIS OF CYTOSOLIC DNA RECOGNITION BY INNATE IMMUNE RECEPTORS
Authors
:
T. C. Jin, T. Xiao
Date
:
21 Apr 11 (Deposition) - 25 Apr 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,K,L,M,N
Biol. Unit 1: A,B,K,L (1x)
Biol. Unit 2: C,D,M,N (1x)
Keywords
:
Ob Fold, Dna Binding, Cytosolic, Immune System-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jin, A. Perry, J. Jiang, P. Smith, J. A. Curry, L. Unterholzner, Z. Jiang, G. Horvath, V. A. Rathinam, R. W. Johnstone, V. Hornung, E. Latz, A. G. Bowie, K. A. Fitzgerald, T. S. Xiao
Structures Of The Hin Domain:Dna Complexes Reveal Ligand Binding And Activation Mechanisms Of The Aim2 Inflammasome And Ifi16 Receptor.
Immunity V. 36 561 2012
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
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No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:191 , ILE A:263 , THR A:316 , HIS A:331
BINDING SITE FOR RESIDUE EDO A 2
2
AC2
SOFTWARE
LYS A:160 , ALA A:179 , THR A:180 , ASN A:265 , THR A:313
BINDING SITE FOR RESIDUE EDO A 7
3
AC3
SOFTWARE
LYS B:335
BINDING SITE FOR RESIDUE EDO B 5
4
AC4
SOFTWARE
LYS B:160 , ALA B:179 , THR B:180 , ASN B:265 , THR B:313
BINDING SITE FOR RESIDUE EDO B 8
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_043379 (C304Y, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_043379
C
304
Y
AIM2_HUMAN
Polymorphism
---
A/B
C
304
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3rn5a1 (A:147-249)
1b: SCOP_d3rn5d1 (D:148-249)
1c: SCOP_d3rn5d2 (D:250-340)
1d: SCOP_d3rn5a2 (A:250-340)
1e: SCOP_d3rn5b1 (B:147-249)
1f: SCOP_d3rn5b2 (B:250-340)
1g: SCOP_d3rn5c1 (C:147-249)
1h: SCOP_d3rn5c2 (C:250-340)
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3rn5a1
A:147-249
1b
d3rn5d1
D:148-249
1c
d3rn5d2
D:250-340
1d
d3rn5a2
A:250-340
1e
d3rn5b1
B:147-249
1f
d3rn5b2
B:250-340
1g
d3rn5c1
C:147-249
1h
d3rn5c2
C:250-340
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (345 KB)
Header - Asym.Unit
Biol.Unit 1 (170 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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