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3RN2
Asym. Unit
Info
Asym.Unit (176 KB)
Biol.Unit 1 (168 KB)
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(1)
Title
:
STRUCTURAL BASIS OF CYTOSOLIC DNA RECOGNITION BY INNATE IMMUNE RECEPTORS
Authors
:
T. C. Jin, T. Xiao
Date
:
21 Apr 11 (Deposition) - 25 Apr 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,K,L
Biol. Unit 1: A,B,K,L (1x)
Keywords
:
Cytosolic Dna Sensor, Inflammasome, Dna Binding, Cytosolic, Immune System-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jin, A. Perry, J. Jiang, P. Smith, J. A. Curry, L. Unterholzner, Z. Jiang, G. Horvath, V. A. Rathinam, R. W. Johnstone, V. Hornung, E. Latz, A. G. Bowie, K. A. Fitzgerald, T. S. Xiao
Structures Of The Hin Domain:Dna Complexes Reveal Ligand Binding And Activation Mechanisms Of The Aim2 Inflammasome And Ifi16 Receptor.
Immunity V. 36 561 2012
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
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No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:191 , PHE A:314 , THR A:316 , VAL A:330 , HIS A:331
BINDING SITE FOR RESIDUE EDO A 1
2
AC2
SOFTWARE
TYR B:212 , ARG B:214
BINDING SITE FOR RESIDUE EDO B 2
3
AC3
SOFTWARE
GLN A:150 , LEU A:154 , ARG A:214
BINDING SITE FOR RESIDUE EDO A 3
4
AC4
SOFTWARE
DT K:14 , DA L:6
BINDING SITE FOR RESIDUE EDO L 21
5
AC5
SOFTWARE
LYS B:160 , LYS B:162 , ALA B:179 , THR B:180 , ASN B:265 , THR B:313
BINDING SITE FOR RESIDUE EDO B 5
6
AC6
SOFTWARE
PHE B:187 , PHE B:188 , PHE B:189 , GLY B:217
BINDING SITE FOR RESIDUE EDO B 6
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_043379 (C304Y, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_043379
C
304
Y
AIM2_HUMAN
Polymorphism
---
A/B
C
304
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rn2a1 (A:147-249)
1b: SCOP_d3rn2a2 (A:250-340)
1c: SCOP_d3rn2b1 (B:147-249)
1d: SCOP_d3rn2b2 (B:250-339)
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3rn2a1
A:147-249
1b
d3rn2a2
A:250-340
1c
d3rn2b1
B:147-249
1d
d3rn2b2
B:250-339
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (176 KB)
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