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3RN1
Asym. Unit
Info
Asym.Unit (581 KB)
Biol.Unit 1 (570 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE W199E-MAUG/PRE-METHYLAMINE DEHYDROGENASE COMPLEX
Authors
:
L. M. R. Jensen, C. M. Wilmot
Date
:
21 Apr 11 (Deposition) - 25 Apr 12 (Release) - 25 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Maug, Methylamine Dehydrogenase, C-Heme, Quinone Cofactor, Electron Transport, Oxidoreductase-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. R. Jensen, C. M. Wilmot
Mutagenesis Of Tryptophan199 Reveals That Electron Hopping Is Required For Maug-Dependent Tryptophan Tryptophylquinone Biosynthesis
To Be Published
[
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Hetero Components
(8, 16)
Info
All Hetero Components
1a: 7-HYDROXY-L-TRYPTOPHAN (0AFa)
1b: 7-HYDROXY-L-TRYPTOPHAN (0AFb)
2a: PENTAETHYLENE GLYCOL (1PEa)
3a: ACETATE ION (ACTa)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
5a: 1,2-ETHANEDIOL (EDOa)
6a: HEME C (HECa)
6b: HEME C (HECb)
6c: HEME C (HECc)
6d: HEME C (HECd)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
7d: SODIUM ION (NAd)
8a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0AF
2
Mod. Amino Acid
7-HYDROXY-L-TRYPTOPHAN
2
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
3
ACT
1
Ligand/Ion
ACETATE ION
4
CA
2
Ligand/Ion
CALCIUM ION
5
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
6
HEC
4
Ligand/Ion
HEME C
7
NA
4
Ligand/Ion
SODIUM ION
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:66 , THR A:275 , PRO A:277 , HOH A:377 , HOH A:378 , HOH A:385 , HOH A:394
BINDING SITE FOR RESIDUE CA A 400
02
AC2
SOFTWARE
ASN A:231 , THR A:233 , HOH A:380 , HOH A:488 , HOH A:844 , HOH A:918
BINDING SITE FOR RESIDUE NA A 401
03
AC3
SOFTWARE
LEU A:250 , ARG A:252 , ILE A:255 , HOH A:768 , HOH A:931
BINDING SITE FOR RESIDUE NA A 402
04
AC4
SOFTWARE
GLN A:29 , SER A:30 , CYS A:31 , CYS A:34 , HIS A:35 , VAL A:55 , ARG A:65 , THR A:67 , PRO A:68 , LEU A:70 , GLN A:91 , PHE A:92 , TRP A:93 , ARG A:96 , LEU A:100 , GLN A:103 , ALA A:104 , PRO A:107 , GLN A:163 , LYS A:265 , HOH A:441 , HOH A:526 , HOH A:1170 , HOH A:1290
BINDING SITE FOR RESIDUE HEC A 500
05
AC5
SOFTWARE
TRP A:93 , ASN A:200 , CYS A:201 , CYS A:204 , HIS A:205 , HIS A:224 , LEU A:228 , PHE A:264 , PRO A:267 , LEU A:269 , TYR A:278 , MET A:279 , HIS A:280 , LEU A:287 , TYR A:294 , SER A:324 , GLU A:327 , HOH A:378 , HOH A:385 , HOH A:423 , HOH A:439 , HOH A:452
BINDING SITE FOR RESIDUE HEC A 600
06
AC6
SOFTWARE
ASN B:66 , THR B:275 , PRO B:277 , HOH B:385 , HOH B:403 , HOH B:417 , HOH B:439
BINDING SITE FOR RESIDUE CA B 400
07
AC7
SOFTWARE
ASN B:231 , THR B:233 , HOH B:413 , HOH B:981 , HOH B:1088 , HOH B:1123
BINDING SITE FOR RESIDUE NA B 401
08
AC8
SOFTWARE
LEU B:250 , ARG B:252 , ILE B:255 , HOH B:513 , HOH B:809 , HOH B:1229
BINDING SITE FOR RESIDUE NA B 402
09
AC9
SOFTWARE
GLN B:29 , SER B:30 , CYS B:31 , CYS B:34 , HIS B:35 , SER B:54 , VAL B:55 , ARG B:65 , THR B:67 , PRO B:68 , LEU B:70 , GLN B:91 , PHE B:92 , TRP B:93 , ARG B:96 , LEU B:100 , GLN B:103 , ALA B:104 , PRO B:107 , MET B:114 , GLN B:163 , LYS B:265 , HOH B:452 , HOH B:545 , HOH B:761 , HOH B:886
BINDING SITE FOR RESIDUE HEC B 500
10
BC1
SOFTWARE
TRP B:93 , ASN B:200 , CYS B:201 , CYS B:204 , HIS B:205 , HIS B:224 , LEU B:228 , PHE B:264 , PRO B:267 , TYR B:278 , MET B:279 , HIS B:280 , LEU B:287 , TYR B:294 , SER B:324 , GLU B:327 , HOH B:376 , HOH B:403 , HOH B:417 , HOH B:425 , HOH B:430
BINDING SITE FOR RESIDUE HEC B 600
11
BC2
SOFTWARE
ASN A:26 , ALA A:121 , ARG A:125 , ASP A:128 , VAL F:219 , PHE F:261 , LEU F:262 , HOH F:888
BINDING SITE FOR RESIDUE 1PE F 387
12
BC3
SOFTWARE
LEU D:291 , THR F:187 , GLN F:235 , LYS F:236 , GLY F:238 , SER F:255 , SER F:256 , HOH F:841 , HOH F:972 , HOH F:1039
BINDING SITE FOR RESIDUE PG4 F 388
13
BC4
SOFTWARE
ARG F:35 , LEU F:37 , GLU F:38 , HOH F:498
BINDING SITE FOR RESIDUE ACT F 389
14
BC5
SOFTWARE
ALA B:164 , ARG B:215
BINDING SITE FOR RESIDUE EDO B 374
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTC (A:9-130,B:9-130|A:176-350,B:176-35...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTC
PS51007
Cytochrome c family profile.
MAUG_PARDP
29-150
196-370
4
A:9-130
B:9-130
A:176-350
B:176-350
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3rn1d_ (D:)
1b: SCOP_d3rn1f_ (F:)
2a: SCOP_d3rn1c_ (C:)
2b: SCOP_d3rn1e_ (E:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(31)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Paracoccus denitrificans [TaxId: 318586]
(18)
1a
d3rn1d_
D:
1b
d3rn1f_
F:
Class
:
Small proteins
(3458)
Fold
:
Methylamine dehydrogenase, L chain
(68)
Superfamily
:
Methylamine dehydrogenase, L chain
(68)
Family
:
Methylamine dehydrogenase, L chain
(41)
Protein domain
:
automated matches
(32)
Paracoccus denitrificans [TaxId: 318586]
(19)
2a
d3rn1c_
C:
2b
d3rn1e_
E:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (581 KB)
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