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3RMT
Biol. Unit 1
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Asym.Unit (559 KB)
Biol.Unit 1 (551 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE 5-ENOLPYRUVOYLSHIKIMATE-3-PHOSPHATE SYNTHASE FROM BACILLUS HALODURANS C-125
Authors
:
V. N. Malashkevich, R. Toro, R. Seidel, U. Ramagopal, W. Zencheck, S. C. York Structural Genomics Research Consortium (Nysgrc)
Date
:
21 Apr 11 (Deposition) - 18 May 11 (Release) - 04 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgrc, Psi-Biology, New York Structural Genomics Research Consortium, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Malashkevich, R. Toro, R. Seidel, U. Ramagopal, W. Zencheck, S. C. Almo
Crystal Structure Of Putative 5-Enolpyruvoylshikimate-3-Phosphate Synthase From Bacillus Halodurans C-125
To Be Published
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
16
Ligand/Ion
SULFATE ION
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:25 , GLY A:97 , THR A:98 , ARG A:125 , GLN A:172
BINDING SITE FOR RESIDUE SO4 A 500
02
AC2
SOFTWARE
HIS A:426 , ARG A:429 , HIS B:426 , ARG B:429
BINDING SITE FOR RESIDUE SO4 B 501
03
AC3
SOFTWARE
HIS A:146 , ARG C:155 , GLY D:222
BINDING SITE FOR RESIDUE SO4 A 502
04
AC4
SOFTWARE
LYS A:16 , HIS A:252 , GLY B:215 , LEU B:216
BINDING SITE FOR RESIDUE SO4 A 503
05
AC5
SOFTWARE
GLY A:50 , ALA A:51 , ASP A:52
BINDING SITE FOR RESIDUE SO4 A 504
06
AC6
SOFTWARE
ARG A:101 , ARG A:125 , PRO A:126
BINDING SITE FOR RESIDUE SO4 A 505
07
AC7
SOFTWARE
ASP A:119 , GLU A:120
BINDING SITE FOR RESIDUE SO4 A 506
08
AC8
SOFTWARE
SER A:26 , ARG A:30 , GLN A:172 , ARG A:197
BINDING SITE FOR RESIDUE SO4 A 507
09
AC9
SOFTWARE
ASN B:95 , GLY B:97 , THR B:98 , ARG B:125 , GLN B:172
BINDING SITE FOR RESIDUE SO4 B 500
10
BC1
SOFTWARE
ARG B:101 , ARG B:125
BINDING SITE FOR RESIDUE SO4 B 456
11
BC2
SOFTWARE
SER B:26 , ARG B:30 , THR B:98 , GLN B:172 , ARG B:197
BINDING SITE FOR RESIDUE SO4 B 502
12
BC3
SOFTWARE
ASP B:119 , GLU B:120 , HOH B:468
BINDING SITE FOR RESIDUE SO4 B 503
13
BC4
SOFTWARE
LYS B:25 , HIS B:391 , ARG B:392
BINDING SITE FOR RESIDUE SO4 B 504
14
BC5
SOFTWARE
ARG B:85 , GLU B:86
BINDING SITE FOR RESIDUE SO4 B 505
15
BC6
SOFTWARE
PRO B:10 , HIS B:11 , ALA B:404 , LYS B:406 , PRO B:407
BINDING SITE FOR RESIDUE SO4 B 506
16
BC7
SOFTWARE
SER C:96 , GLY C:97 , THR C:98 , ARG C:125 , GLN C:172
BINDING SITE FOR RESIDUE SO4 C 500
17
BC8
SOFTWARE
LYS C:16 , HIS C:252
BINDING SITE FOR RESIDUE SO4 C 501
18
BC9
SOFTWARE
ARG C:349 , HIS C:391 , ARG C:392
BINDING SITE FOR RESIDUE SO4 C 502
19
CC1
SOFTWARE
LYS C:25 , GLY C:50 , ALA C:51 , ASP C:52
BINDING SITE FOR RESIDUE SO4 C 503
20
CC2
SOFTWARE
ARG C:101 , ARG C:125 , PRO C:126
BINDING SITE FOR RESIDUE SO4 C 504
21
CC3
SOFTWARE
SER C:26 , ARG C:30 , THR C:98 , GLN C:172 , ARG C:197
BINDING SITE FOR RESIDUE SO4 C 505
22
CC4
SOFTWARE
GLY C:40 , THR C:41
BINDING SITE FOR RESIDUE SO4 C 506
23
CC5
SOFTWARE
PRO C:10 , HIS C:11 , ALA C:404 , LYS C:406 , PRO C:407
BINDING SITE FOR RESIDUE SO4 C 507
24
CC6
SOFTWARE
HIS C:426 , ARG C:429 , HIS D:426 , ARG D:429
BINDING SITE FOR RESIDUE SO4 C 456
25
CC7
SOFTWARE
SER D:26 , ARG D:30 , THR D:98 , ALA D:171 , GLN D:172 , ARG D:197
BINDING SITE FOR RESIDUE SO4 D 501
26
CC8
SOFTWARE
LYS D:25 , ASP D:52 , ASN D:95 , SER D:96 , GLY D:97 , THR D:98 , ARG D:125 , GLN D:172
BINDING SITE FOR RESIDUE SO4 D 502
27
CC9
SOFTWARE
ARG D:101 , ARG D:125
BINDING SITE FOR RESIDUE SO4 D 503
28
DC1
SOFTWARE
ASP D:119 , GLU D:120
BINDING SITE FOR RESIDUE SO4 D 505
29
DC2
SOFTWARE
PRO A:10 , HIS A:11 , ALA A:404 , LYS A:406 , PRO A:407
BINDING SITE FOR RESIDUE SO4 A 456
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: EPSP_SYNTHASE_1 (A:91-105,B:91-105,C:91-105,D:91-10...)
2: EPSP_SYNTHASE_2 (A:344-361,B:346-361,C:343-361,D:34...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPSP_SYNTHASE_1
PS00104
EPSP synthase signature 1.
AROA1_BACHD
89-103
4
A:91-105
B:91-105
C:91-105
D:91-105
2
EPSP_SYNTHASE_2
PS00885
EPSP synthase signature 2.
AROA1_BACHD
341-359
4
A:344-361
B:346-361
C:343-361
D:346-361
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rmta_ (A:)
1b: SCOP_d3rmtb_ (B:)
1c: SCOP_d3rmtc_ (C:)
1d: SCOP_d3rmtd_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Bacillus halodurans [TaxId: 86665]
(1)
1a
d3rmta_
A:
1b
d3rmtb_
B:
1c
d3rmtc_
C:
1d
d3rmtd_
D:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_3rmtD01 (D:9-427)
1b: PFAM_EPSP_synthase_3rmtD02 (D:9-427)
1c: PFAM_EPSP_synthase_3rmtD03 (D:9-427)
1d: PFAM_EPSP_synthase_3rmtD04 (D:9-427)
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Clans
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Organisms
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(
)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Bacillus halodurans
(1)
1a
EPSP_synthase-3rmtD01
D:9-427
1b
EPSP_synthase-3rmtD02
D:9-427
1c
EPSP_synthase-3rmtD03
D:9-427
1d
EPSP_synthase-3rmtD04
D:9-427
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