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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3RLO
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
STRUCTURAL BASIS OF CYTOSOLIC DNA RECOGNITION BY INNATE RECEPTORS
Authors
:
T. C. Jin, T. Xiao
Date
:
19 Apr 11 (Deposition) - 25 Apr 12 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hin200/Ob Fold/Dna Binding, Dna Binding/Cytosolic Dna Sensor, Dna, Cytosol, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Jin, A. Perry, J. Jiang, P. Smith, J. A. Curry, L. Unterholzner, Z. Jiang, G. Horvath, V. A. Rathinam, R. W. Johnstone, V. Hornung, E. Latz, A. G. Bowie, K. A. Fitzgerald, T. S. Xiao
Structures Of The Hin Domain:Dna Complexes Reveal Ligand Binding And Activation Mechanisms Of The Aim2 Inflammasome And Ifi16 Receptor.
Immunity V. 36 561 2012
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: FORMIC ACID (FMTa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
1
Ligand/Ion
FORMIC ACID
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:648 , HOH A:775
BINDING SITE FOR RESIDUE EDO A 1
02
AC2
SOFTWARE
HOH A:99 , ARG A:751
BINDING SITE FOR RESIDUE EDO A 2
03
AC3
SOFTWARE
HOH A:45 , PHE A:611 , CYS A:637 , GLY A:640 , PHE A:641
BINDING SITE FOR RESIDUE EDO A 3
04
AC4
SOFTWARE
HOH A:122 , LYS A:598 , LYS A:696 , CYS A:727 , GLU A:728 , GLU A:729
BINDING SITE FOR RESIDUE EDO A 4
05
AC5
SOFTWARE
ASN A:658 , GLU A:660 , THR A:682 , LYS A:683
BINDING SITE FOR RESIDUE EDO A 5
06
AC6
SOFTWARE
ASN A:584 , ILE A:666 , ALA A:669 , SER A:670
BINDING SITE FOR RESIDUE EDO A 6
07
AC7
SOFTWARE
SER A:670 , THR A:672
BINDING SITE FOR RESIDUE EDO A 7
08
AC8
SOFTWARE
HOH A:105 , HOH A:117 , HOH A:157 , ASN A:584 , ALA A:585 , ALA A:769
BINDING SITE FOR RESIDUE EDO A 8
09
AC9
SOFTWARE
GLU A:692 , GLN A:708 , ASP A:709 , ASN A:710
BINDING SITE FOR RESIDUE EDO A 9
10
BC1
SOFTWARE
HOH A:75 , HOH A:76 , HOH A:142 , VAL A:753
BINDING SITE FOR RESIDUE FMT A 771
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029491 (T723S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029491
T
723
S
IF16_HUMAN
Polymorphism
6940
A
T
723
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.13a (A:575-695)
Exon 1.13e (A:696-759)
Exon 1.14b (A:760-770 (gaps))
View:
Select:
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All Exon Boundaries
1: Boundary 1.12/1.13a
2: Boundary 1.13a/1.13e
3: Boundary 1.13e/1.14b
4: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4c
ENST00000295809
4c
ENSE00001446388
chr1:
158979712-158979951
240
IF16_HUMAN
-
0
0
-
-
1.5
ENST00000295809
5
ENSE00002197956
chr1:
158984451-158984735
285
IF16_HUMAN
1-89
89
0
-
-
1.6b
ENST00000295809
6b
ENSE00002145190
chr1:
158985662-158985777
116
IF16_HUMAN
89-127
39
0
-
-
1.7b
ENST00000295809
7b
ENSE00001713738
chr1:
158986323-158986490
168
IF16_HUMAN
128-183
56
0
-
-
1.8b
ENST00000295809
8b
ENSE00001756224
chr1:
158988019-158988441
423
IF16_HUMAN
184-324
141
0
-
-
1.9
ENST00000295809
9
ENSE00001745832
chr1:
158990131-158990319
189
IF16_HUMAN
325-387
63
0
-
-
1.10
ENST00000295809
10
ENSE00001775551
chr1:
159002314-159002481
168
IF16_HUMAN
388-443
56
0
-
-
1.11
ENST00000295809
11
ENSE00001604845
chr1:
159015087-159015254
168
IF16_HUMAN
444-499
56
0
-
-
1.12
ENST00000295809
12
ENSE00001647098
chr1:
159019222-159019389
168
IF16_HUMAN
500-555
56
0
-
-
1.13a
ENST00000295809
13a
ENSE00001285404
chr1:
159021469-159021888
420
IF16_HUMAN
556-695
140
1
A:575-695
121
1.13e
ENST00000295809
13e
ENSE00001076041
chr1:
159023323-159023514
192
IF16_HUMAN
696-759
64
1
A:696-759
64
1.14b
ENST00000295809
14b
ENSE00001285450
chr1:
159024611-159024938
328
IF16_HUMAN
760-785
26
1
A:760-770 (gaps)
17
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3rloa1 (A:575-672)
1b: SCOP_d3rloa2 (A:673-770)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
HIN-200/IF120x domain
(5)
Protein domain
:
Gamma-interferon-inducible protein Ifi-16
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3rloa1
A:575-672
1b
d3rloa2
A:673-770
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (77 KB)
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