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3RL8
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HDLG1-PDZ2 COMPLEXED WITH APC
Authors
:
Z. Zhang, H. Li, G. Wu
Date
:
19 Apr 11 (Deposition) - 14 Dec 11 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Pdz-Ligand Complex, Membrane Protein-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, H. Li, L. Chen, X. Lu, J. Zhang, P. Xu, K. Lin, G. Wu
Molecular Basis For The Recognition Of Adenomatous Polyposi Coli By The Discs Large 1 Protein.
Plos One V. 6 23507 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_005057 (L2839F, chain F, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_005057
L
2839
F
APC_HUMAN
Disease (FAP)
---
F
L
2839
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|A:319-406,B:319-405,C:319-406,D:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DLG1_HUMAN
224-311
319-406
466-547
5
-
A:319-406
B:319-405
C:319-406
D:319-406
E:319-405
-
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Exons
(1, 1)
Info
All Exons
Exon 1.20g (F:2838-2843)
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All Exon Boundaries
1: Boundary 1.19/1.20g
2: Boundary 1.20g/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000257430
2c
ENSE00001913252
chr5:
112073585-112073622
38
APC_HUMAN
-
0
0
-
-
1.4
ENST00000257430
4
ENSE00002144134
chr5:
112090570-112090722
153
APC_HUMAN
1-45
45
0
-
-
1.5b
ENST00000257430
5b
ENSE00000917796
chr5:
112102023-112102107
85
APC_HUMAN
46-74
29
0
-
-
1.6b
ENST00000257430
6b
ENSE00000972225
chr5:
112102886-112103087
202
APC_HUMAN
74-141
68
0
-
-
1.7
ENST00000257430
7
ENSE00000917798
chr5:
112111326-112111434
109
APC_HUMAN
141-177
37
0
-
-
1.8a
ENST00000257430
8a
ENSE00000972226
chr5:
112116487-112116600
114
APC_HUMAN
178-215
38
0
-
-
1.9
ENST00000257430
9
ENSE00000972227
chr5:
112128143-112128226
84
APC_HUMAN
216-243
28
0
-
-
1.10
ENST00000257430
10
ENSE00000972228
chr5:
112136976-112137080
105
APC_HUMAN
244-278
35
0
-
-
1.12
ENST00000257430
12
ENSE00000917801
chr5:
112151192-112151290
99
APC_HUMAN
279-311
33
0
-
-
1.13b
ENST00000257430
13b
ENSE00000917803
chr5:
112154663-112155041
379
APC_HUMAN
312-438
127
0
-
-
1.14a
ENST00000257430
14a
ENSE00000917804
chr5:
112157593-112157688
96
APC_HUMAN
438-470
33
0
-
-
1.16a
ENST00000257430
16a
ENSE00000917807
chr5:
112162805-112162944
140
APC_HUMAN
470-516
47
0
-
-
1.17
ENST00000257430
17
ENSE00000760099
chr5:
112163626-112163703
78
APC_HUMAN
517-542
26
0
-
-
1.18b
ENST00000257430
18b
ENSE00000917809
chr5:
112164553-112164669
117
APC_HUMAN
543-581
39
0
-
-
1.19
ENST00000257430
19
ENSE00000972229
chr5:
112170648-112170862
215
APC_HUMAN
582-653
72
0
-
-
1.20g
ENST00000257430
20g
ENSE00000972230
chr5:
112173250-112181936
8687
APC_HUMAN
653-2843
2191
1
F:2838-2843
6
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3rl8a_ (A:)
1b: SCOP_d3rl8b_ (B:)
1c: SCOP_d3rl8c_ (C:)
1d: SCOP_d3rl8d_ (D:)
1e: SCOP_d3rl8e_ (E:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
automated matches
(53)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3rl8a_
A:
1b
d3rl8b_
B:
1c
d3rl8c_
C:
1d
d3rl8d_
D:
1e
d3rl8e_
E:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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