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3RL3
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
RAT METALLOPHOSPHODIESTERASE MPPED2
Authors
:
M. Podobnik, U. Dermol
Date
:
19 Apr 11 (Deposition) - 10 Aug 11 (Release) - 04 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Beta Fold, Metallophosphodiesterase, Wild Type, Gmp, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Dermol, V. Janardan, R. Tyagi, S. S. Visweswariah, M. Podobnik
Unique Utilization Of A Phosphoprotein Phosphatase Fold By Mammalian Phosphodiesterase Associated With Wagr Syndrome.
J. Mol. Biol. V. 412 481 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
2a: CHLORIDE ION (CLa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
4e: MANGANESE (II) ION (MNe)
4f: MANGANESE (II) ION (MNf)
4g: MANGANESE (II) ION (MNg)
4h: MANGANESE (II) ION (MNh)
4i: MANGANESE (II) ION (MNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
MN
9
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:44 , ASP A:45 , PRO A:46 , THR A:259 , ILE A:284 , HOH A:593 , HOH A:600
BINDING SITE FOR RESIDUE EDO A 333
02
AC2
SOFTWARE
ASP A:65 , HIS A:67 , ASP A:86 , HIS A:254 , HOH A:415 , MN A:555 , 5GP A:951
BINDING SITE FOR RESIDUE MN A 444
03
AC3
SOFTWARE
ASP A:86 , ASN A:117 , HIS A:213 , HOH A:349 , HOH A:415 , MN A:444 , 5GP A:951
BINDING SITE FOR RESIDUE MN A 555
04
AC4
SOFTWARE
GLU A:147 , ASP A:150 , ASN A:151 , HOH A:541
BINDING SITE FOR RESIDUE MN A 666
05
AC5
SOFTWARE
GLU A:205 , VAL A:243 , HOH A:326 , HOH A:520 , HOH A:523
BINDING SITE FOR RESIDUE MN A 771
06
AC6
SOFTWARE
GLY A:206 , ASP A:208 , HOH A:585 , MN A:773
BINDING SITE FOR RESIDUE MN A 772
07
AC7
SOFTWARE
ASP A:208 , HOH A:585 , MN A:772
BINDING SITE FOR RESIDUE MN A 773
08
AC8
SOFTWARE
ASP A:45 , HOH A:556 , HOH A:557
BINDING SITE FOR RESIDUE MN A 774
09
AC9
SOFTWARE
HIS A:42 , HOH A:494 , HOH A:566
BINDING SITE FOR RESIDUE MN A 775
10
BC1
SOFTWARE
SER A:34 , HOH A:297 , HOH A:298 , 5GP A:951
BINDING SITE FOR RESIDUE MN A 776
11
BC2
SOFTWARE
ARG A:220 , ARG A:229 , HOH A:345
BINDING SITE FOR RESIDUE CL A 800
12
BC3
SOFTWARE
HIS A:67 , ASP A:86 , ASN A:117 , HIS A:118 , PHE A:183 , LYS A:225 , VAL A:230 , GLY A:252 , ILE A:253 , HIS A:254 , GLU A:255 , PHE A:277 , HOH A:297 , HOH A:298 , HOH A:304 , HOH A:349 , HOH A:415 , MN A:444 , HOH A:521 , MN A:555 , MN A:776
BINDING SITE FOR RESIDUE 5GP A 951
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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