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3RL2
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
HIV NEF DERIVED PEPTIDE NEF73 COMPLEXED TO HLA-A*0301
Authors
:
S. Zhang, J. Liu, H. Cheng, S. Tan, J. Qi, J. Yan, G. F. Gao
Date
:
19 Apr 11 (Deposition) - 29 Feb 12 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hla-A*0301, Cd8+ T Cell Immunity, Hiv Derived Peptides, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Zhang, J. Liu, H. Cheng, S. Tan, J. Qi, J. Yan, G. F. Gao
Structural Basis Of Cross-Allele Presentation By Hla-A*0301 And Hla-A*1101 Revealed By Two Hiv-Derived Peptide Complexe
Mol. Immunol. V. 49 395 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_050310 (R65G, chain A, )
02: VAR_050311 (Q70H, chain A, )
03: VAR_050312 (D77N, chain A, )
04: VAR_050313 (I97M, chain A, )
05: VAR_050314 (S105P, chain A, )
06: VAR_050315 (G107W, chain A, )
07: VAR_050316 (F109L, chain A, )
08: VAR_050317 (N127K, chain A, )
09: VAR_050318 (I142T, chain A, )
10: VAR_050319 (R145H, chain A, )
11: VAR_004351 (E152V, chain A, )
12: VAR_004352 (L156Q, chain A, )
13: VAR_016604 (D161E, chain A, )
14: VAR_033149 (G162A, chain A, )
15: VAR_016605 (G175R, chain A, )
16: VAR_050320 (R181H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_050310
R
89
G
1A03_HUMAN
Polymorphism
1059459
A
R
65
G
02
UniProt
VAR_050311
Q
94
H
1A03_HUMAN
Polymorphism
1059463
A
Q
70
H
03
UniProt
VAR_050312
D
101
N
1A03_HUMAN
Polymorphism
1136688
A
D
77
N
04
UniProt
VAR_050313
I
121
M
1A03_HUMAN
Polymorphism
1136695
A
I
97
M
05
UniProt
VAR_050314
S
129
P
1A03_HUMAN
Polymorphism
1136700
A
S
105
P
06
UniProt
VAR_050315
G
131
W
1A03_HUMAN
Polymorphism
1136702
A
G
107
W
07
UniProt
VAR_050316
F
133
L
1A03_HUMAN
Polymorphism
1059488
A
F
109
L
08
UniProt
VAR_050317
N
151
K
1A03_HUMAN
Polymorphism
1059509
A
N
127
K
09
UniProt
VAR_050318
I
166
T
1A03_HUMAN
Polymorphism
1059516
A
I
142
T
10
UniProt
VAR_050319
R
169
H
1A03_HUMAN
Polymorphism
1059520
A
R
145
H
11
UniProt
VAR_004351
E
176
V
1A03_HUMAN
Polymorphism
9256983
A
E
152
V
12
UniProt
VAR_004352
L
180
Q
1A03_HUMAN
Polymorphism
---
A
L
156
Q
13
UniProt
VAR_016604
D
185
E
1A03_HUMAN
Polymorphism
1059542
A
D
161
E
14
UniProt
VAR_033149
G
186
A
1A03_HUMAN
Polymorphism
---
A
G
162
A
15
UniProt
VAR_016605
G
199
R
1A03_HUMAN
Polymorphism
41559916
A
G
175
R
16
UniProt
VAR_050320
R
205
H
1A03_HUMAN
Polymorphism
17185861
A
R
181
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
B:78-84
1A03_HUMAN
281-287
1
A:257-263
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:1-1)
Exon 1.4b (A:1-91)
Exon 1.4e (A:91-183)
Exon 1.5 (A:183-274)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.4e
4: Boundary 1.4e/1.5
5: Boundary 1.5/1.6a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000396634
1
ENSE00001677386
chr6:
29909037-29909096
60
1A03_HUMAN
-
0
0
-
-
1.2
ENST00000396634
2
ENSE00001617475
chr6:
29909743-29909873
131
1A03_HUMAN
-
0
0
-
-
1.3b
ENST00000396634
3b
ENSE00001633002
chr6:
29910181-29910403
223
1A03_HUMAN
1-25
25
1
A:1-1
1
1.4b
ENST00000396634
4b
ENSE00001709288
chr6:
29910534-29910803
270
1A03_HUMAN
25-115
91
1
A:1-91
91
1.4e
ENST00000396634
4e
ENSE00001681031
chr6:
29911045-29911320
276
1A03_HUMAN
115-207
93
1
A:91-183
93
1.5
ENST00000396634
5
ENSE00001789740
chr6:
29911899-29912174
276
1A03_HUMAN
207-299
93
1
A:183-274
92
1.6a
ENST00000396634
6a
ENSE00001725298
chr6:
29912277-29912393
117
1A03_HUMAN
299-338
40
0
-
-
1.6d
ENST00000396634
6d
ENSE00001649179
chr6:
29912836-29912868
33
1A03_HUMAN
338-349
12
0
-
-
1.7
ENST00000396634
7
ENSE00001689328
chr6:
29913011-29913058
48
1A03_HUMAN
349-365
17
0
-
-
1.8b
ENST00000396634
8b
ENSE00001732087
chr6:
29913228-29913661
434
1A03_HUMAN
365-365
1
0
-
-
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (73 KB)
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