PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3RL0
Asym. Unit
Info
Asym.Unit (771 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (94 KB)
Biol.Unit 4 (99 KB)
Biol.Unit 5 (98 KB)
Biol.Unit 6 (98 KB)
Biol.Unit 7 (97 KB)
Biol.Unit 8 (98 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
TRUNCATED SNARE COMPLEX WITH COMPLEXIN (P1)
Authors
:
D. Kuemmel, K. M. Reinisch
Date
:
19 Apr 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n
Biol. Unit 1: A,B,C,D,g (1x)
Biol. Unit 2: E,F,G,H,h (1x)
Biol. Unit 3: I,J,K,L,i (1x)
Biol. Unit 4: M,N,O,P,j (1x)
Biol. Unit 5: Q,R,S,T,k (1x)
Biol. Unit 6: U,V,W,X,l (1x)
Biol. Unit 7: Y,Z,a,b,m (1x)
Biol. Unit 8: c,d,e,f,n (1x)
Keywords
:
Snare Proteins, Membrane Fusion, Membrane Protein-Exocytosis Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kummel, S. S. Krishnakumar, D. T. Radoff, F. Li, C. G. Giraudo, F. Pincet, J. E. Rothman, K. M. Reinisch
Complexin Cross-Links Prefusion Snares Into A Zigzag Array.
Nat. Struct. Mol. Biol. V. 18 927 2011
[
close entry info
]
Hetero Components
(1, 16)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_073698 (I67N, chain C/G/K/O/S/W/a/e, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073698
I
67
N
SNP25_HUMAN
Disease (CMS18)
---
C/G/K/O/S/W/a/e
I
67
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 48)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-78,G:19-81,K:19-78,O:19-78,S:...)
2: V_SNARE (A:31-60,E:31-60,I:31-60,M:31-60,Q:...)
3: SYNAPTOBREVIN (A:49-60,E:49-60,I:49-60,M:49-60,Q:...)
4: SYNTAXIN (B:198-237,F:198-237,J:198-237,N:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_HUMAN
19-81
140-202
16
C:19-78
G:19-81
K:19-78
O:19-78
S:19-78
W:19-77
a:19-78
e:19-78
D:141-200
H:141-199
L:141-202
P:141-202
T:141-200
X:141-201
b:141-199
f:141-200
STX1A_RAT
192-254
8
B:192-249
F:192-251
J:192-248
N:192-247
R:192-251
V:192-248
Z:192-247
d:192-248
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_HUMAN
31-91
8
A:31-60
E:31-60
I:31-60
M:31-60
Q:31-60
U:31-60
Y:31-60
c:31-60
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_HUMAN
49-68
8
A:49-60
E:49-60
I:49-60
M:49-60
Q:49-60
U:49-60
Y:49-60
c:49-60
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
8
B:198-237
F:198-237
J:198-237
N:198-237
R:198-237
V:198-237
Z:198-237
d:198-237
[
close PROSITE info
]
Exons
(8, 64)
Info
All Exons
Exon 1.8 (B:191-226 | F:191-226 | J:190-226 ...)
Exon 1.9 (B:227-249 | F:227-251 | J:227-248 ...)
Exon 2.3a (C:8-24 | - | G:8-24 | - | K:9-24 |...)
Exon 2.4a (C:25-38 | - | G:25-38 | - | K:25-3...)
Exon 2.5 (C:39-55 | - | G:39-55 | - | K:39-5...)
Exon 2.7 (C:55-79 | - | G:55-81 | - | K:55-7...)
Exon 2.9 (- | D:140-184 | - | H:140-184 | - ...)
Exon 2.10 (- | D:185-200 | - | H:185-199 | - ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.7/1.8
02: Boundary 1.8/1.9
03: Boundary 1.9/1.10
04: Boundary 2.1a/2.3a
05: Boundary 2.3a/2.4a
06: Boundary 2.4a/2.5
07: Boundary 2.5/2.7
08: Boundary 2.7/2.8b
09: Boundary 2.8b/2.9
10: Boundary 2.9/2.10
11: Boundary 2.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
8
B:191-226
F:191-226
J:190-226
N:191-226
R:191-226
V:191-226
Z:190-226
d:190-226
36
36
37
36
36
36
37
37
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
8
B:227-249
F:227-251
J:227-248
N:227-247
R:227-251
V:227-248
Z:227-247
d:227-248
23
25
22
21
25
22
21
22
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
2.1a
ENST00000254976
1a
ENSE00001206321
chr20:
10199478-10199625
148
SNP25_HUMAN
-
0
0
-
-
2.3a
ENST00000254976
3a
ENSE00001229068
chr20:
10256077-10256211
135
SNP25_HUMAN
1-24
24
8
C:8-24
-
G:8-24
-
K:9-24
-
O:8-24
-
S:10-24
-
W:8-24
-
a:10-24
-
e:8-24
-
17
-
17
-
16
-
17
-
15
-
17
-
15
-
17
-
2.4a
ENST00000254976
4a
ENSE00001017161
chr20:
10258333-10258374
42
SNP25_HUMAN
25-38
14
8
C:25-38
-
G:25-38
-
K:25-38
-
O:25-38
-
S:25-38
-
W:25-38
-
a:25-38
-
e:25-38
-
14
-
14
-
14
-
14
-
14
-
14
-
14
-
14
-
2.5
ENST00000254976
5
ENSE00000906745
chr20:
10265372-10265420
49
SNP25_HUMAN
39-55
17
8
C:39-55
-
G:39-55
-
K:39-55
-
O:39-55
-
S:39-55
-
W:39-55
-
a:39-55
-
e:39-55
-
17
-
17
-
17
-
17
-
17
-
17
-
17
-
17
-
2.7
ENST00000254976
7
ENSE00002191142
chr20:
10273809-10273926
118
SNP25_HUMAN
55-94
40
8
C:55-79
-
G:55-81
-
K:55-79
-
O:55-79
-
S:55-79
-
W:55-77
-
a:55-79
-
e:55-79
-
25
-
27
-
25
-
25
-
25
-
23
-
25
-
25
-
2.8b
ENST00000254976
8b
ENSE00000906747
chr20:
10277573-10277698
126
SNP25_HUMAN
94-136
43
0
-
-
2.9
ENST00000254976
9
ENSE00000906748
chr20:
10279916-10280060
145
SNP25_HUMAN
136-184
49
8
-
D:140-184
-
H:140-184
-
L:140-184
-
P:140-184
-
T:140-184
-
X:140-184
-
b:140-184
-
f:140-184
-
45
-
45
-
45
-
45
-
45
-
45
-
45
-
45
2.10
ENST00000254976
10
ENSE00001937220
chr20:
10286777-10288066
1290
SNP25_HUMAN
185-206
22
8
-
D:185-200
-
H:185-199
-
L:185-202
-
P:185-202
-
T:185-200
-
X:185-201
-
b:185-199
-
f:185-200
-
16
-
15
-
18
-
18
-
16
-
17
-
15
-
16
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain a
Chain b
Chain c
Chain d
Chain e
Chain f
Chain g
Chain h
Chain i
Chain j
Chain k
Chain l
Chain m
Chain n
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (771 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (99 KB)
Header - Biol.Unit 2
Biol.Unit 3 (94 KB)
Header - Biol.Unit 3
Biol.Unit 4 (99 KB)
Header - Biol.Unit 4
Biol.Unit 5 (98 KB)
Header - Biol.Unit 5
Biol.Unit 6 (98 KB)
Header - Biol.Unit 6
Biol.Unit 7 (97 KB)
Header - Biol.Unit 7
Biol.Unit 8 (98 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3RL0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help