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3RKR
Asym. Unit
Info
Asym.Unit (288 KB)
Biol.Unit 1 (279 KB)
Biol.Unit 2 (279 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A METAGENOMIC SHORT-CHAIN OXIDOREDUCTASE (SDR) IN COMPLEX WITH NADP
Authors
:
H. Mayerhofer, P. Bijtenhoorn, W. R. Streit, J. Mueller-Dieckmann
Date
:
18 Apr 11 (Deposition) - 30 Nov 11 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (2x)
Biol. Unit 2: B,C (2x)
Keywords
:
Rossmann Fold, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Bijtenhoorn, H. Mayerhofer, J. Muller-Dieckmann, C. Utpatel, C. Schipper, C. Hornung, M. Szesny, S. Grond, A. Thurmer, E. Brzuszkiewicz, R. Daniel, K. Dierking, H. Schulenburg, W. R. Strei
A Novel Metagenomic Short-Chain Dehydrogenase/Reductase Attenuates Pseudomonas Aeruginosa Biofilm Formation And Virulence On Caenorhabditis Elegans.
Plos One V. 6 26278 2011
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2
SO4
13
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:13 , SER A:15 , ARG A:16 , ALA A:37 , ARG A:38 , ASP A:39 , CYS A:62 , ASP A:63 , LEU A:64 , ALA A:91 , GLY A:92 , VAL A:93 , GLY A:94 , HOH A:279 , HOH A:288
BINDING SITE FOR RESIDUE NAP A 240
02
AC2
SOFTWARE
GLU A:172 , ARG A:175 , SER D:188 , ARG D:190 , ARG D:234 , PRO D:235
BINDING SITE FOR RESIDUE SO4 A 241
03
AC3
SOFTWARE
GLY A:17 , ILE A:18 , HOH A:282 , HOH A:305
BINDING SITE FOR RESIDUE SO4 A 242
04
AC4
SOFTWARE
SER A:65 , HIS A:66 , SER A:67 , HOH A:266 , HOH A:306
BINDING SITE FOR RESIDUE SO4 A 243
05
AC5
SOFTWARE
GLY B:13 , SER B:15 , ARG B:16 , ALA B:37 , ARG B:38 , ASP B:39 , LYS B:42 , CYS B:62 , ASP B:63 , LEU B:64 , ALA B:91 , GLY B:92 , VAL B:93 , GLY B:94 , HOH B:300 , HOH B:309
BINDING SITE FOR RESIDUE NAP B 240
06
AC6
SOFTWARE
GLY B:17 , ILE B:18 , HOH B:276
BINDING SITE FOR RESIDUE SO4 B 241
07
AC7
SOFTWARE
ALA B:145 , GLY B:146 , LYS B:147 , ASN B:148 , ARG B:190
BINDING SITE FOR RESIDUE SO4 B 242
08
AC8
SOFTWARE
SER B:65 , HIS B:66 , SER B:67 , HOH B:253 , HOH B:265
BINDING SITE FOR RESIDUE SO4 B 243
09
AC9
SOFTWARE
GLY C:17 , ILE C:18 , ALA C:203 , HOH C:260 , HOH C:269
BINDING SITE FOR RESIDUE SO4 C 240
10
BC1
SOFTWARE
PRO B:105 , ASP B:109 , SER C:67 , LYS C:117 , SO4 C:242
BINDING SITE FOR RESIDUE SO4 C 241
11
BC2
SOFTWARE
HIS C:66 , SER C:67 , SO4 C:241
BINDING SITE FOR RESIDUE SO4 C 242
12
BC3
SOFTWARE
SER A:188 , ARG A:234 , PRO A:235 , GLU D:172 , ARG D:175
BINDING SITE FOR RESIDUE SO4 D 240
13
BC4
SOFTWARE
ALA D:37 , ARG D:38 , LYS D:42
BINDING SITE FOR RESIDUE SO4 D 241
14
BC5
SOFTWARE
GLY D:17 , ILE D:18 , HOH D:253 , HOH D:256 , HOH D:277
BINDING SITE FOR RESIDUE SO4 D 242
15
BC6
SOFTWARE
SER D:65 , HIS D:66 , SER D:67 , HOH D:261
BINDING SITE FOR RESIDUE SO4 D 243
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rkra_ (A:)
1b: SCOP_d3rkrb_ (B:)
1c: SCOP_d3rkrc_ (C:)
1d: SCOP_d3rkrd_ (D:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Uncultured bacterium [TaxId: 460938]
(1)
1a
d3rkra_
A:
1b
d3rkrb_
B:
1c
d3rkrc_
C:
1d
d3rkrd_
D:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (288 KB)
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