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3RK8
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (103 KB)
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Title
:
CRYSTAL STRUCTURE OF THE CHLORIDE INHIBITED DIHYDRODIPICOLINATE SYNTHASE FROM ACINETOBACTER BAUMANNII COMPLEXED WITH PYRUVATE AT 1.8 A RESOLUTION
Authors
:
S. Kaushik, A. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Date
:
17 Apr 11 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dhdps, Tim Barrel, Lysine Biosynthesis, Chloride, Pyruvate, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Kaushik, A. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of The Chloride Inhibited Dihydrodipicolinate Synthase From Acinetobacter Baumannii Complexed With Pyruvate At 1. 8 A Resolution
To Be Published
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
4a: PYRUVIC ACID (PYRa)
4b: PYRUVIC ACID (PYRb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GOL
9
Ligand/Ion
GLYCEROL
3
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PYR
2
Ligand/Ion
PYRUVIC ACID
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:133 , VAL A:135 , ARG A:138 , LYS A:161 , GLY A:186 , VAL A:205 , ASN A:248 , HOH A:415 , HOH A:419 , HOH A:594
BINDING SITE FOR RESIDUE PYR A 292
02
AC2
SOFTWARE
LYS A:15 , THR A:264 , GLY A:265 , ILE A:266 , PRO A:272
BINDING SITE FOR RESIDUE GOL A 293
03
AC3
SOFTWARE
GLN A:3 , GLY A:4 , ASN A:37 , ALA A:219 , ILE A:222 , HOH A:352 , HOH A:447
BINDING SITE FOR RESIDUE GOL A 294
04
AC4
SOFTWARE
ASP A:20 , TRP A:21 , LYS A:22 , HOH A:424 , HOH A:438
BINDING SITE FOR RESIDUE GOL A 295
05
AC5
SOFTWARE
GLU A:54 , GLU A:55 , GLN A:58 , HOH A:436
BINDING SITE FOR RESIDUE GOL A 296
06
AC6
SOFTWARE
GLU A:25 , ARG A:65 , HOH A:420
BINDING SITE FOR RESIDUE GOL A 297
07
AC7
SOFTWARE
ASP A:16 , ARG A:267 , HOH A:404 , HOH A:443 , HOH A:445
BINDING SITE FOR RESIDUE PEG A 298
08
AC8
SOFTWARE
THR A:44 , LEU A:101 , LYS A:161 , HOH A:403 , HOH A:417
BINDING SITE FOR RESIDUE CL A 299
09
AC9
SOFTWARE
TYR B:133 , VAL B:135 , ARG B:138 , LYS B:161 , GLY B:186 , VAL B:205 , ASN B:248 , HOH B:425 , HOH B:428 , HOH B:605
BINDING SITE FOR RESIDUE PYR B 292
10
BC1
SOFTWARE
LYS B:15 , THR B:264 , GLY B:265 , ILE B:266 , PRO B:272
BINDING SITE FOR RESIDUE GOL B 293
11
BC2
SOFTWARE
ALA B:182 , ASP B:200 , GOL B:295 , HOH B:377 , HOH B:387 , HOH B:576
BINDING SITE FOR RESIDUE GOL B 294
12
BC3
SOFTWARE
MET B:195 , GLY B:198 , ALA B:199 , ILE B:222 , LYS B:224 , GOL B:294 , HOH B:576 , HOH B:578
BINDING SITE FOR RESIDUE GOL B 295
13
BC4
SOFTWARE
GLY B:165 , ASP B:187 , GLU B:189 , HOH B:474 , HOH B:557 , HOH B:590
BINDING SITE FOR RESIDUE GOL B 296
14
BC5
SOFTWARE
TRP B:21 , GLN B:58
BINDING SITE FOR RESIDUE PEG B 297
15
BC6
SOFTWARE
LEU B:101 , LYS B:161 , HOH B:401 , HOH B:427 , HOH B:599
BINDING SITE FOR RESIDUE CL B 298
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3rk8a_ (A:)
1b: SCOP_d3rk8b_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
automated matches
(113)
Protein domain
:
automated matches
(113)
Acinetobacter baumannii [TaxId: 575584]
(10)
1a
d3rk8a_
A:
1b
d3rk8b_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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