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Getting 'Biological Unit' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3RK2
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
TRUNCATED SNARE COMPLEX
Authors
:
D. Kuemmel, K. M. Reinisch
Date
:
17 Apr 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Snare Proteins, Membrane Fusion, Membrane Protein-Exocytosis Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kummel, S. S. Krishnakumar, D. T. Radoff, F. Li, C. G. Giraudo, F. Pincet, J. E. Rothman, K. M. Reinisch
Complexin Cross-Links Prefusion Snares Into A Zigzag Array.
Nat. Struct. Mol. Biol. V. 18 927 2011
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:231 , GLU C:52 , HOH C:92 , GLU G:13
BINDING SITE FOR RESIDUE CA B 1
2
AC2
SOFTWARE
GLU B:228 , ASP B:231 , GLU G:10 , GLU G:13
BINDING SITE FOR RESIDUE CA B 4
3
AC3
SOFTWARE
GLU C:13 , ASP F:231 , GLU G:52
BINDING SITE FOR RESIDUE CA C 2
4
AC4
SOFTWARE
GLU C:13 , GLU F:228 , ASP F:231
BINDING SITE FOR RESIDUE CA C 84
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_073698 (I67N, chain C/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073698
I
67
N
SNP25_HUMAN
Disease (CMS18)
---
C/G
I
67
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 12)
Info
All PROSITE Patterns/Profiles
1: T_SNARE (C:19-81,G:19-81|D:141-202,H:141-20...)
2: V_SNARE (A:31-60,E:31-60)
3: SYNAPTOBREVIN (A:49-60,E:49-60)
4: SYNTAXIN (B:198-237,F:198-237)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SNP25_HUMAN
19-81
140-202
4
C:19-81
G:19-81
D:141-202
H:141-202
STX1A_RAT
192-254
2
B:192-248
F:192-248
2
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP2_HUMAN
31-91
2
A:31-60
E:31-60
3
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP2_HUMAN
49-68
2
A:49-60
E:49-60
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX1A_RAT
198-237
2
B:198-237
F:198-237
[
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]
Exons
(8, 16)
Info
All Exons
Exon 1.8 (B:190-226 | F:190-226)
Exon 1.9 (B:227-248 | F:227-248)
Exon 2.3a (C:7-24 | - | G:7-24 | -)
Exon 2.4a (C:25-38 | - | G:25-38 | -)
Exon 2.5 (C:39-55 | - | G:39-55 | -)
Exon 2.7 (C:55-82 | - | G:55-82 | -)
Exon 2.9 (- | D:140-184 | - | H:140-184)
Exon 2.10 (- | D:185-203 | - | H:185-203)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.7/1.8
02: Boundary 1.8/1.9
03: Boundary 1.9/1.10
04: Boundary 2.1a/2.3a
05: Boundary 2.3a/2.4a
06: Boundary 2.4a/2.5
07: Boundary 2.5/2.7
08: Boundary 2.7/2.8b
09: Boundary 2.8b/2.9
10: Boundary 2.9/2.10
11: Boundary 2.10/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000049601
1
ENSRNOE00000287178
chr12:
22765064-22765004
61
STX1A_RAT
1-10
10
0
-
-
1.2
ENSRNOT00000049601
2
ENSRNOE00000361256
chr12:
22752097-22752020
78
STX1A_RAT
11-36
26
0
-
-
1.3
ENSRNOT00000049601
3
ENSRNOE00000279130
chr12:
22751752-22751653
100
STX1A_RAT
37-70
34
0
-
-
1.4
ENSRNOT00000049601
4
ENSRNOE00000343385
chr12:
22748087-22748013
75
STX1A_RAT
70-95
26
0
-
-
1.5
ENSRNOT00000049601
5
ENSRNOE00000295520
chr12:
22747334-22747261
74
STX1A_RAT
95-119
25
0
-
-
1.6
ENSRNOT00000049601
6
ENSRNOE00000302188
chr12:
22747159-22747051
109
STX1A_RAT
120-156
37
0
-
-
1.7
ENSRNOT00000049601
7
ENSRNOE00000358330
chr12:
22746606-22746533
74
STX1A_RAT
156-180
25
0
-
-
1.8
ENSRNOT00000049601
8
ENSRNOE00000316992
chr12:
22743199-22743062
138
STX1A_RAT
181-226
46
2
B:190-226
F:190-226
37
37
1.9
ENSRNOT00000049601
9
ENSRNOE00000335636
chr12:
22739362-22739252
111
STX1A_RAT
227-263
37
2
B:227-248
F:227-248
22
22
1.10
ENSRNOT00000049601
10
ENSRNOE00000345574
chr12:
22738422-22737112
1311
STX1A_RAT
264-288
25
0
-
-
2.1a
ENST00000254976
1a
ENSE00001206321
chr20:
10199478-10199625
148
SNP25_HUMAN
-
0
0
-
-
2.3a
ENST00000254976
3a
ENSE00001229068
chr20:
10256077-10256211
135
SNP25_HUMAN
1-24
24
2
C:7-24
-
G:7-24
-
18
-
18
-
2.4a
ENST00000254976
4a
ENSE00001017161
chr20:
10258333-10258374
42
SNP25_HUMAN
25-38
14
2
C:25-38
-
G:25-38
-
14
-
14
-
2.5
ENST00000254976
5
ENSE00000906745
chr20:
10265372-10265420
49
SNP25_HUMAN
39-55
17
2
C:39-55
-
G:39-55
-
17
-
17
-
2.7
ENST00000254976
7
ENSE00002191142
chr20:
10273809-10273926
118
SNP25_HUMAN
55-94
40
2
C:55-82
-
G:55-82
-
28
-
28
-
2.8b
ENST00000254976
8b
ENSE00000906747
chr20:
10277573-10277698
126
SNP25_HUMAN
94-136
43
0
-
-
2.9
ENST00000254976
9
ENSE00000906748
chr20:
10279916-10280060
145
SNP25_HUMAN
136-184
49
2
-
D:140-184
-
H:140-184
-
45
-
45
2.10
ENST00000254976
10
ENSE00001937220
chr20:
10286777-10288066
1290
SNP25_HUMAN
185-206
22
2
-
D:185-203
-
H:185-203
-
19
-
19
[
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3rk2b_ (B:)
1b: SCOP_d3rk2f_ (F:)
2a: SCOP_d3rk2c_ (C:)
2b: SCOP_d3rk2d_ (D:)
2c: SCOP_d3rk2g_ (G:)
2d: SCOP_d3rk2h_ (H:)
View:
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Classes
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
automated matches
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d3rk2b_
B:
1b
d3rk2f_
F:
Protein domain
:
Synaptosomal-associated protein SNAP-25
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d3rk2c_
C:
2b
d3rk2d_
D:
2c
d3rk2g_
G:
2d
d3rk2h_
H:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
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Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
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Asym.Unit (169 KB)
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