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3RJO
Asym. Unit
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Asym.Unit (76 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ERAP1 PEPTIDE BINDING DOMAIN
Authors
:
H. -C. Guo, D. Lakshminarasimhan, A. Gandhi
Date
:
15 Apr 11 (Deposition) - 21 Dec 11 (Release) - 07 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Erap1, Aminopeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gandhi, D. Lakshminarasimhan, Y. Sun, H. C. Guo
Structural Insights Into The Molecular Ruler Mechanism Of The Endoplasmic Reticulum Aminopeptidase Erap1.
Sci Rep V. 1 186 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:918 , TRP A:921
BINDING SITE FOR RESIDUE EDO A 1
2
AC2
SOFTWARE
ASP A:659 , TRP A:932 , SER A:935 , GLU A:936 , GLU A:939
BINDING SITE FOR RESIDUE EDO A 2
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_046682 (D575G, chain A, )
2: VAR_021555 (D575N, chain A, )
3: VAR_021556 (R725Q, chain A, )
4: VAR_012784 (Q730E, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_046682
D
575
G
ERAP1_HUMAN
Polymorphism
6863093
A
D
575
G
2
UniProt
VAR_021555
D
575
N
ERAP1_HUMAN
Polymorphism
10050860
A
D
575
N
3
UniProt
VAR_021556
R
725
Q
ERAP1_HUMAN
Polymorphism
17482078
A
R
725
Q
4
UniProt
VAR_012784
Q
730
E
ERAP1_HUMAN
Polymorphism
27044
A
Q
730
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3rjoa2 (A:615-947)
2a: SCOP_d3rjoa1 (A:529-614)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
ERAP1 C-terminal-like
(4)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3rjoa2
A:615-947
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Zn aminopeptidase insert domain
(10)
Family
:
automated matches
(6)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d3rjoa1
A:529-614
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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