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Getting 'Exon' information from database.
3RJ3
Asym. Unit
Info
Asym.Unit (431 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (143 KB)
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(1)
Title
:
COMPLEMENT COMPONENTS FACTOR H CCP19-20 (S1191L MUTANT) AND C3D IN COMPLEX
Authors
:
H. P. Morgan, J. P. Hannan
Date
:
15 Apr 11 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,E (1x)
Keywords
:
C3D-Alpha-Alpha Barrel, Complement Component, Factor H, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Herbert, D. Kavanagh, C. Johansson, H. P. Morgan, B. S. Blaum, J. P. Hannan, P. N. Barlow, D. Uhrin
Structural And Functional Characterization Of The Product O Disease-Related Factor H Gene Conversion.
Biochemistry V. 51 1874 2012
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:84 , GLU A:127 , PRO A:130 , VAL A:131 , GLN A:134
BINDING SITE FOR RESIDUE GOL A 311
2
AC2
SOFTWARE
TYR A:273 , ASP B:36 , GLU B:37
BINDING SITE FOR RESIDUE GOL B 311
3
AC3
SOFTWARE
MET A:206 , GLY A:207 , ARG A:208 , TYR C:273
BINDING SITE FOR RESIDUE GOL C 311
[
close Site info
]
SAPs(SNPs)/Variants
(29, 82)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_063655 (R49L, chain A/B/C, )
02: VAR_063216 (A101V, chain A/B/C, )
03: VAR_063217 (D122N, chain A/B/C, )
04: VAR_063218 (C165W, chain A/B/C, )
05: VAR_063219 (Q168K, chain A/B/C, )
06: VAR_022761 (D223N, chain A/B/C, )
07: VAR_019207 (G231D, chain A/B/C, )
08: VAR_025874 (D1119G, chain D/E/F, )
09: VAR_025875 (V1134G, chain D/E/F, )
10: VAR_025876 (Y1142D, chain D/E/F, )
11: VAR_043896 (Q1143E, chain D/E/F, )
12: VAR_025877 (W1157R, chain D/E/F, )
13: VAR_025878 (C1163W, chain D/E/F, )
14: VAR_063650 (I1169L, chain D/E/F, )
15: VAR_063651 (W1183C, chain D/F, )
16: VAR_025879 (W1183L, chain D/F, )
17: VAR_025880 (W1183R, chain D/F, )
18: VAR_025881 (T1184R, chain D/F, )
19: VAR_019407 (L1189R, chain D/E/F, )
20: VAR_019408 (L1191L, chain D/E/F, )
21: VAR_025882 (G1194D, chain D/E/F, )
22: VAR_025883 (V1197A, chain D/E/F, )
23: VAR_048816 (V1197V, chain D/E/F, )
24: VAR_025884 (E1198A, chain D/E/F, )
25: VAR_031986 (F1199S, chain D/E/F, )
26: VAR_025885 (R1210C, chain D/E, )
27: VAR_025886 (R1215G, chain D/E/F, )
28: VAR_025887 (R1215Q, chain D/E/F, )
29: VAR_025888 (P1226S, chain D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
A/B/C
R
49
L
02
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
A/B/C
A
101
V
03
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
A/B/C
D
122
N
04
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
A/B/C
C
165
W
05
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
A/B/C
Q
168
K
06
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
A/B/C
D
223
N
07
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
A/B/C
G
231
D
08
UniProt
VAR_025874
D
1119
G
CFAH_HUMAN
Disease (CFHD)
---
D/E/F
D
1119
G
09
UniProt
VAR_025875
V
1134
G
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
V
1134
G
10
UniProt
VAR_025876
Y
1142
D
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
Y
1142
D
11
UniProt
VAR_043896
Q
1143
E
CFAH_HUMAN
Polymorphism
34247141
D/E/F
Q
1143
E
12
UniProt
VAR_025877
W
1157
R
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
W
1157
R
13
UniProt
VAR_025878
C
1163
W
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
C
1163
W
14
UniProt
VAR_063650
I
1169
L
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
I
1169
L
15
UniProt
VAR_063651
W
1183
C
CFAH_HUMAN
Disease (AHUS1)
---
D/F
W
1183
C
16
UniProt
VAR_025879
W
1183
L
CFAH_HUMAN
Disease (AHUS1)
---
D/F
W
1183
L
17
UniProt
VAR_025880
W
1183
R
CFAH_HUMAN
Disease (AHUS1)
---
D/F
W
1183
R
18
UniProt
VAR_025881
T
1184
R
CFAH_HUMAN
Disease (CFHD)
---
D/F
T
1184
R
19
UniProt
VAR_019407
L
1189
R
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
L
1189
R
20
UniProt
VAR_019408
S
1191
L
CFAH_HUMAN
Disease (AHUS1)
460897
D/E/F
L
1191
L
21
UniProt
VAR_025882
G
1194
D
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
G
1194
D
22
UniProt
VAR_025883
V
1197
A
CFAH_HUMAN
Disease (AHUS1)
460184
D/E/F
V
1197
A
23
UniProt
VAR_048816
A
296
V
FHR1_HUMAN
Polymorphism
16840561
D/E/F
V
1197
V
24
UniProt
VAR_025884
E
1198
A
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
E
1198
A
25
UniProt
VAR_031986
F
1199
S
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
F
1199
S
26
UniProt
VAR_025885
R
1210
C
CFAH_HUMAN
Disease (ARMD4)
---
D/E
R
1210
C
27
UniProt
VAR_025886
R
1215
G
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
R
1215
G
28
UniProt
VAR_025887
R
1215
Q
CFAH_HUMAN
Disease (CFHD)
---
D/E/F
R
1215
Q
29
UniProt
VAR_025888
P
1226
S
CFAH_HUMAN
Disease (AHUS1)
---
D/E/F
P
1226
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|-|...)
2: ALPHA_2_MACROGLOBULIN (A:14-22,B:14-22,C:14-22)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAH_HUMAN
19-82
83-143
144-207
208-264
265-322
387-444
446-507
515-566
567-625
628-686
689-746
751-805
809-866
868-928
929-986
987-1045
1046-1104
1107-1165
1194-1230
6
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
D:1107-1165
E:1107-1165
F:1107-1165
D:1194-1230
E:1194-1230
F:1194-1228
FHR1_HUMAN
85-142
145-203
206-264
273-329
6
-
-
D:1107-1165
E:1107-1165
F:1107-1165
D:1174-1230
E:1174-1230
F:1174-1228
2
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
3
A:14-22
B:14-22
C:14-22
[
close PROSITE info
]
Exons
(7, 21)
Info
All Exons
Exon 1.26 (A:3-59 | B:10-59 | C:3-59)
Exon 1.27 (A:59-84 | B:59-84 | C:59-84)
Exon 1.28c (A:84-137 | B:84-137 | C:84-137)
Exon 1.29 (A:138-170 | B:138-170 | C:138-170)
Exon 1.31a (A:171-223 | B:171-223 | C:171-223)
Exon 1.31d (A:223-277 | B:223-277 | C:223-277)
Exon 1.32 (A:278-294 | B:278-309 | C:278-294)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.25/1.26
2: Boundary 1.26/1.27
3: Boundary 1.27/1.28c
4: Boundary 1.28c/1.29
5: Boundary 1.29/1.31a
6: Boundary 1.31a/1.31d
7: Boundary 1.31d/1.32
8: Boundary 1.32/1.33
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000245907
3a
ENSE00001938285
chr19:
6720693-6720527
167
CO3_HUMAN
1-25
25
0
-
-
1.4
ENST00000245907
4
ENSE00001053574
chr19:
6719414-6719222
193
CO3_HUMAN
25-89
65
0
-
-
1.5
ENST00000245907
5
ENSE00000858140
chr19:
6718423-6718258
166
CO3_HUMAN
90-145
56
0
-
-
1.6a
ENST00000245907
6a
ENSE00001053592
chr19:
6718175-6718105
71
CO3_HUMAN
145-168
24
0
-
-
1.7
ENST00000245907
7
ENSE00000858137
chr19:
6714457-6714363
95
CO3_HUMAN
169-200
32
0
-
-
1.8b
ENST00000245907
8b
ENSE00001053577
chr19:
6714259-6714177
83
CO3_HUMAN
200-228
29
0
-
-
1.9
ENST00000245907
9
ENSE00001053565
chr19:
6714093-6714003
91
CO3_HUMAN
228-258
31
0
-
-
1.11
ENST00000245907
11
ENSE00001053527
chr19:
6713520-6713418
103
CO3_HUMAN
258-292
35
0
-
-
1.12b
ENST00000245907
12b
ENSE00000858133
chr19:
6713326-6713200
127
CO3_HUMAN
293-335
43
0
-
-
1.13
ENST00000245907
13
ENSE00001053519
chr19:
6712634-6712519
116
CO3_HUMAN
335-373
39
0
-
-
1.14b
ENST00000245907
14b
ENSE00001053582
chr19:
6712417-6712268
150
CO3_HUMAN
374-423
50
0
-
-
1.15
ENST00000245907
15
ENSE00000858130
chr19:
6711207-6710998
210
CO3_HUMAN
424-493
70
0
-
-
1.16b
ENST00000245907
16b
ENSE00001159750
chr19:
6710856-6710650
207
CO3_HUMAN
494-562
69
0
-
-
1.17b
ENST00000245907
17b
ENSE00000858128
chr19:
6709853-6709695
159
CO3_HUMAN
563-615
53
0
-
-
1.18
ENST00000245907
18
ENSE00000858127
chr19:
6707940-6707811
130
CO3_HUMAN
616-659
44
0
-
-
1.19
ENST00000245907
19
ENSE00001053520
chr19:
6707548-6707477
72
CO3_HUMAN
659-683
25
0
-
-
1.20
ENST00000245907
20
ENSE00001053532
chr19:
6707284-6707087
198
CO3_HUMAN
683-749
67
0
-
-
1.21c
ENST00000245907
21c
ENSE00001053537
chr19:
6702590-6702482
109
CO3_HUMAN
749-785
37
0
-
-
1.22
ENST00000245907
22
ENSE00001053579
chr19:
6702223-6702138
86
CO3_HUMAN
785-814
30
0
-
-
1.23b
ENST00000245907
23b
ENSE00001053525
chr19:
6697805-6697663
143
CO3_HUMAN
814-861
48
0
-
-
1.23d
ENST00000245907
23d
ENSE00000858122
chr19:
6697567-6697355
213
CO3_HUMAN
862-932
71
0
-
-
1.24b
ENST00000245907
24b
ENSE00000858121
chr19:
6696670-6696604
67
CO3_HUMAN
933-955
23
0
-
-
1.25
ENST00000245907
25
ENSE00001053553
chr19:
6696476-6696390
87
CO3_HUMAN
955-984
30
0
-
-
1.26
ENST00000245907
26
ENSE00000858119
chr19:
6694645-6694442
204
CO3_HUMAN
984-1052
69
3
A:3-59
B:10-59
C:3-59
57
50
57
1.27
ENST00000245907
27
ENSE00000858118
chr19:
6693498-6693423
76
CO3_HUMAN
1052-1077
26
3
A:59-84
B:59-84
C:59-84
26
26
26
1.28c
ENST00000245907
28c
ENSE00000858117
chr19:
6693094-6692935
160
CO3_HUMAN
1077-1130
54
3
A:84-137
B:84-137
C:84-137
54
54
54
1.29
ENST00000245907
29
ENSE00000858116
chr19:
6690738-6690640
99
CO3_HUMAN
1131-1163
33
3
A:138-170
B:138-170
C:138-170
33
33
33
1.31a
ENST00000245907
31a
ENSE00000858115
chr19:
6686913-6686757
157
CO3_HUMAN
1164-1216
53
3
A:171-223
B:171-223
C:171-223
53
53
53
1.31d
ENST00000245907
31d
ENSE00001504968
chr19:
6686298-6686135
164
CO3_HUMAN
1216-1270
55
3
A:223-277
B:223-277
C:223-277
55
55
55
1.32
ENST00000245907
32
ENSE00001159688
chr19:
6685157-6684999
159
CO3_HUMAN
1271-1323
53
3
A:278-294
B:278-309
C:278-294
17
32
17
1.33
ENST00000245907
33
ENSE00000858111
chr19:
6684845-6684786
60
CO3_HUMAN
1324-1343
20
0
-
-
1.34a
ENST00000245907
34a
ENSE00001053551
chr19:
6684661-6684571
91
CO3_HUMAN
1344-1374
31
0
-
-
1.35a
ENST00000245907
35a
ENSE00000858109
chr19:
6684450-6684399
52
CO3_HUMAN
1374-1391
18
0
-
-
1.36b
ENST00000245907
36b
ENSE00000858108
chr19:
6682240-6682153
88
CO3_HUMAN
1391-1420
30
0
-
-
1.37
ENST00000245907
37
ENSE00000858107
chr19:
6682041-6681952
90
CO3_HUMAN
1421-1450
30
0
-
-
1.38
ENST00000245907
38
ENSE00000858106
chr19:
6680274-6680169
106
CO3_HUMAN
1451-1486
36
0
-
-
1.40a
ENST00000245907
40a
ENSE00000858105
chr19:
6679507-6679418
90
CO3_HUMAN
1486-1516
31
0
-
-
1.41a
ENST00000245907
41a
ENSE00000858104
chr19:
6679219-6679136
84
CO3_HUMAN
1516-1544
29
0
-
-
1.42
ENST00000245907
42
ENSE00000858103
chr19:
6678466-6678383
84
CO3_HUMAN
1544-1572
29
0
-
-
1.43
ENST00000245907
43
ENSE00000858102
chr19:
6678298-6678163
136
CO3_HUMAN
1572-1617
46
0
-
-
1.44c
ENST00000245907
44c
ENSE00001159829
chr19:
6678034-6677846
189
CO3_HUMAN
1617-1663
47
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3rj3a_ (A:)
1b: SCOP_d3rj3c_ (C:)
1c: SCOP_d3rj3b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Complement components
(19)
Protein domain
:
Thio-ester containing domain (TED) from Complement C3, aka C3d or C3dg
(16)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3rj3a_
A:
1b
d3rj3c_
C:
1c
d3rj3b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
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by Exon
by Amino Acid
by Nucleotide
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by Charge
by Rainbow (Group)
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molecule
background
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(e.g.: "#3cb371" or "60,179,113")
Stereo
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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