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3RIH
Asym. Unit
Info
Asym.Unit (323 KB)
Biol.Unit 1 (315 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE SHORT CHAIN DEHYDROGENASE OR REDUCTASE FROM MYCOBACTERIUM ABSCESSUS
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
13 Apr 11 (Deposition) - 20 Apr 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Tuberculosis, Water Contaminant, Putative Uncharacterized Protein, Potassium Ion, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
[
close entry info
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
3a: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5a)
3b: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5b)
3c: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5c)
3d: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-... (PG5d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
K
4
Ligand/Ion
POTASSIUM ION
3
PG5
4
Ligand/Ion
1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
[
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:64 , GLY A:67 , GLY A:69 , HOH A:324 , HOH A:367 , HOH A:498
BINDING SITE FOR RESIDUE K A 272
02
AC2
SOFTWARE
PHE A:108 , TYR A:164 , TYR A:170 , HOH A:802
BINDING SITE FOR RESIDUE PG5 A 273
03
AC3
SOFTWARE
ARG A:182 , HOH A:618 , ALA B:175 , ARG B:182 , HOH B:615
BINDING SITE FOR RESIDUE EDO A 274
04
AC4
SOFTWARE
ASP A:114 , MET A:116
BINDING SITE FOR RESIDUE EDO A 275
05
AC5
SOFTWARE
ARG A:89 , ALA A:138 , ARG B:54
BINDING SITE FOR RESIDUE EDO A 276
06
AC6
SOFTWARE
VAL A:261 , HOH A:807 , HOH A:808 , VAL D:261
BINDING SITE FOR RESIDUE EDO A 277
07
AC7
SOFTWARE
PRO A:81 , TYR A:134 , GLN A:137 , HOH A:519 , HOH A:520
BINDING SITE FOR RESIDUE EDO A 278
08
AC8
SOFTWARE
ASN A:104 , GLY A:106 , TYR A:170 , LYS A:174 , HOH A:331
BINDING SITE FOR RESIDUE EDO A 279
09
AC9
SOFTWARE
GLY B:64 , GLY B:67 , GLY B:69 , HOH B:308 , HOH B:500 , HOH B:598
BINDING SITE FOR RESIDUE K B 272
10
BC1
SOFTWARE
PHE B:108 , TYR B:164 , TRP B:167 , TYR B:170 , HOH B:811
BINDING SITE FOR RESIDUE PG5 B 273
11
BC2
SOFTWARE
HOH A:295 , PRO B:81 , TYR B:134 , GLN B:137 , HOH B:682
BINDING SITE FOR RESIDUE EDO B 274
12
BC3
SOFTWARE
ARG A:54 , ARG B:89 , ALA B:141 , PRO B:142 , HOH B:799
BINDING SITE FOR RESIDUE EDO B 275
13
BC4
SOFTWARE
ASP B:114
BINDING SITE FOR RESIDUE EDO B 276
14
BC5
SOFTWARE
ASN B:104 , ALA B:105 , GLY B:106 , TYR B:170 , LYS B:174 , HOH B:365
BINDING SITE FOR RESIDUE EDO B 277
15
BC6
SOFTWARE
SER B:79 , GLU B:123 , ASP B:126 , HOH B:347
BINDING SITE FOR RESIDUE EDO B 278
16
BC7
SOFTWARE
GLY C:64 , GLY C:67 , GLY C:69 , HOH C:356
BINDING SITE FOR RESIDUE K C 272
17
BC8
SOFTWARE
TYR C:170 , HOH C:814
BINDING SITE FOR RESIDUE PG5 C 273
18
BC9
SOFTWARE
ARG C:182 , HOH C:730 , ALA D:175 , ARG D:182 , HOH D:643
BINDING SITE FOR RESIDUE EDO C 274
19
CC1
SOFTWARE
VAL B:261 , VAL C:261 , PRO C:263 , HOH C:740 , HOH C:742
BINDING SITE FOR RESIDUE EDO C 275
20
CC2
SOFTWARE
PRO C:81 , TYR C:134 , GLN C:137 , ALA C:138 , EDO D:274 , HOH D:303
BINDING SITE FOR RESIDUE EDO C 276
21
CC3
SOFTWARE
ASP C:114 , HOH C:721 , EDO D:275
BINDING SITE FOR RESIDUE EDO C 277
22
CC4
SOFTWARE
ASN C:104 , ALA C:105 , GLY C:106 , TYR C:170 , LYS C:174
BINDING SITE FOR RESIDUE EDO C 278
23
CC5
SOFTWARE
GLY D:64 , GLY D:67 , GLY D:69 , HOH D:308 , HOH D:761
BINDING SITE FOR RESIDUE K D 272
24
CC6
SOFTWARE
HOH A:313 , PHE D:108 , TYR D:164 , TRP D:167 , TYR D:170 , HOH D:813
BINDING SITE FOR RESIDUE PG5 D 273
25
CC7
SOFTWARE
EDO C:276 , ASP D:114 , MET D:116
BINDING SITE FOR RESIDUE EDO D 274
26
CC8
SOFTWARE
EDO C:277 , HOH C:298 , PRO D:81 , TYR D:134 , GLN D:137 , ALA D:138 , HOH D:390
BINDING SITE FOR RESIDUE EDO D 275
27
CC9
SOFTWARE
ASN D:104 , ALA D:105 , GLY D:106 , THR D:154 , TYR D:170 , LYS D:174 , HOH D:376
BINDING SITE FOR RESIDUE EDO D 276
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3riha_ (A:)
1b: SCOP_d3rihb_ (B:)
1c: SCOP_d3rihc_ (C:)
1d: SCOP_d3rihd_ (D:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Mycobacterium abscessus [TaxId: 561007]
(2)
1a
d3riha_
A:
1b
d3rihb_
B:
1c
d3rihc_
C:
1d
d3rihd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_3rihD01 (D:20-189)
1b: PFAM_adh_short_3rihD02 (D:20-189)
1c: PFAM_adh_short_3rihD03 (D:20-189)
1d: PFAM_adh_short_3rihD04 (D:20-189)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(2)
1a
adh_short-3rihD01
D:20-189
1b
adh_short-3rihD02
D:20-189
1c
adh_short-3rihD03
D:20-189
1d
adh_short-3rihD04
D:20-189
[
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]
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