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3RI1
Biol. Unit 2
Info
Asym.Unit (106 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (51 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF FGFR2 KINASE IN COMPLEX WITH ARQ 069
Authors
:
S. Eathiraj, R. Palma, M. Hirschi, E. Volckova, E. Nakuci, J. Castro, C. T. C. Chan, D. S. France, M. A. Ashwell
Date
:
12 Apr 11 (Deposition) - 04 May 11 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Fgfr1 Kinase, Fgfr2 Kinase, Inactive Conformation, Kinase-Inhibitor Complex, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Eathiraj, R. Palma, M. Hirschi, E. Volckova, E. Nakuci, J. Castro, C. R. Chen, T. C. Chan, D. S. France, M. A. Ashwell
A Novel Mode Of Protein Kinase Inhibition Exploiting Hydrophobic Motifs Of Autoinhibited Kinases: Discovery Of Atp-Independent Inhibitors Of Fibroblast Growth Factor Receptor.
J. Biol. Chem. V. 286 20677 2011
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: (6S)-6-PHENYL-5,6-DIHYDROBENZO[H]Q... (3RHa)
1b: (6S)-6-PHENYL-5,6-DIHYDROBENZO[H]Q... (3RHb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3RH
1
Ligand/Ion
(6S)-6-PHENYL-5,6-DIHYDROBENZO[H]QUINAZOLIN-2-AMINE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
HOH A:127 , THR A:681 , HIS A:682 , GLN A:683 , ARG B:612
BINDING SITE FOR RESIDUE SO4 A 4
2
AC7
SOFTWARE
HOH B:326 , HOH B:419 , VAL B:495 , ALA B:515 , LYS B:517 , VAL B:564 , GLU B:565 , ALA B:567 , LEU B:633 , SO4 B:769
BINDING SITE FOR RESIDUE 3RH B 1
3
AC8
SOFTWARE
HOH A:76 , HOH B:226 , VAL B:709 , GLU B:710
BINDING SITE FOR RESIDUE SO4 B 9
4
AC9
SOFTWARE
HOH B:213 , HOH B:330 , ARG B:625 , THR B:660 , ASN B:662 , GLY B:663 , ARG B:664
BINDING SITE FOR RESIDUE SO4 B 8
5
BC1
SOFTWARE
3RH B:1 , HOH B:416 , GLU B:489 , GLY B:490 , CYS B:491 , PHE B:492 , GLY B:493
BINDING SITE FOR RESIDUE SO4 B 769
6
BC2
SOFTWARE
HOH B:137 , HOH B:205 , ARG B:577 , ARG B:580 , GLY B:700 , GLY B:701 , SER B:702
BINDING SITE FOR RESIDUE SO4 B 5
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SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_023788 (K526E, chain B, )
02: VAR_017276 (N549H, chain B, )
03: VAR_017277 (E565G, chain B, )
04: VAR_046071 (R612T, chain B, )
05: VAR_015012 (G613R, chain B, )
06: VAR_029884 (A628T, chain B, )
07: VAR_017278 (K641R, chain B, )
08: VAR_029885 (A648T, chain B, )
09: VAR_017279 (K659N, chain B, )
10: VAR_017280 (G663E, chain B, )
11: VAR_017281 (R678G, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023788
K
526
E
FGFR2_HUMAN
Disease (FSPC)
---
B
K
526
E
02
UniProt
VAR_017276
N
549
H
FGFR2_HUMAN
Disease (CS)
---
B
N
549
H
03
UniProt
VAR_017277
E
565
G
FGFR2_HUMAN
Disease (PS)
---
B
E
565
G
04
UniProt
VAR_046071
R
612
T
FGFR2_HUMAN
Unclassified
---
B
R
612
T
05
UniProt
VAR_015012
G
613
R
FGFR2_HUMAN
Polymorphism
---
B
G
613
R
06
UniProt
VAR_029884
A
628
T
FGFR2_HUMAN
Disease (LADDS)
---
B
A
628
T
07
UniProt
VAR_017278
K
641
R
FGFR2_HUMAN
Disease (PS)
---
B
K
641
R
08
UniProt
VAR_029885
A
648
T
FGFR2_HUMAN
Disease (LADDS)
---
B
A
648
T
09
UniProt
VAR_017279
K
659
N
FGFR2_HUMAN
Unclassified
---
B
K
659
N
10
UniProt
VAR_017280
G
663
E
FGFR2_HUMAN
Disease (PS)
---
B
G
663
E
11
UniProt
VAR_017281
R
678
G
FGFR2_HUMAN
Disease (CS)
---
B
R
678
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:487-517)
2: PROTEIN_KINASE_TYR (B:622-634)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
FGFR2_HUMAN
487-517
1
-
B:487-517
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
FGFR2_HUMAN
622-634
1
-
B:622-634
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ri1a_ (A:)
1b: SCOP_d3ri1b_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3ri1a_
A:
1b
d3ri1b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3ri1B01 (B:481-757)
1b: PFAM_Pkinase_Tyr_3ri1B02 (B:481-757)
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)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3ri1B01
B:481-757
1b
Pkinase_Tyr-3ri1B02
B:481-757
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All Atoms
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Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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Asym.Unit (106 KB)
Header - Asym.Unit
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