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3RHO
Asym. Unit
Info
Asym.Unit (363 KB)
Biol.Unit 1 (354 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E673Q MUTANT OF C-TERMINAL DOMAIN OF 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH NADP
Authors
:
Y. Tsybovsky
Date
:
11 Apr 11 (Deposition) - 27 Apr 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.26
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, S. A. Krupenko
Conserved Catalytic Residues Of The Aldh1L1 Aldehyde Dehydrogenase Domain Control Binding And Discharging Of The Coenzyme.
J. Biol. Chem. V. 286 23357 2011
[
close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:570 , ILE A:571 , PRO A:572 , TRP A:573 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , LEU A:674 , CYS A:707 , LYS A:757 , GLU A:804 , PHE A:806 , HOH A:1103 , HOH A:1117 , HOH A:1135 , HOH A:1137 , HOH A:1206 , HOH A:1208 , HOH A:1281 , HOH A:1310 , HOH A:1375
BINDING SITE FOR RESIDUE NAP A 903
02
AC2
SOFTWARE
HOH B:230 , HOH B:308 , VAL B:570 , ILE B:571 , PRO B:572 , TRP B:573 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , ILE B:658 , LEU B:674 , GLY B:675 , LYS B:757 , GLU B:804 , PHE B:806 , HOH B:974 , HOH B:982 , HOH B:1029 , HOH B:1219
BINDING SITE FOR RESIDUE NAP B 903
03
AC3
SOFTWARE
HOH C:173 , HOH C:218 , HOH C:290 , VAL C:570 , ILE C:571 , PRO C:572 , TRP C:573 , LYS C:597 , ALA C:599 , GLN C:600 , SER C:629 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , CYS C:707 , LYS C:757 , GLU C:804 , PHE C:806 , HOH C:930 , HOH C:1010 , HOH C:1218
BINDING SITE FOR RESIDUE NAP C 903
04
AC4
SOFTWARE
HOH D:133 , HOH D:202 , HOH D:352 , VAL D:570 , ILE D:571 , PRO D:572 , TRP D:573 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , LEU D:674 , LYS D:757 , GLU D:804 , PHE D:806 , HOH D:958 , HOH D:1061 , HOH D:1179 , HOH D:1213
BINDING SITE FOR RESIDUE NAP D 903
05
AC5
SOFTWARE
ARG A:636 , PRO A:641
BINDING SITE FOR RESIDUE SO4 A 3006
06
AC6
SOFTWARE
ARG A:764 , TYR A:799
BINDING SITE FOR RESIDUE SO4 A 3011
07
AC7
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:1170 , HOH A:1212 , HOH A:1309 , HOH B:29 , GLY B:881 , LYS B:882
BINDING SITE FOR RESIDUE SO4 A 3015
08
AC8
SOFTWARE
ARG A:551 , ARG A:554 , TYR C:848
BINDING SITE FOR RESIDUE SO4 A 3018
09
AC9
SOFTWARE
ASN A:548 , HOH A:1162 , HOH A:1274 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 3021
10
BC1
SOFTWARE
THR A:445 , ASN A:738 , GLU A:741 , ARG A:781 , HOH C:932 , HOH C:1367
BINDING SITE FOR RESIDUE SO4 A 3024
11
BC2
SOFTWARE
TYR A:575 , TRP A:582 , ASN A:706 , CYS A:707 , THR A:866
BINDING SITE FOR RESIDUE GOL A 3025
12
BC3
SOFTWARE
ARG B:554 , LYS D:852 , HOH D:1020
BINDING SITE FOR RESIDUE SO4 B 3003
13
BC4
SOFTWARE
ASP B:851 , LYS B:852 , HOH B:957 , ARG D:554
BINDING SITE FOR RESIDUE SO4 B 3004
14
BC5
SOFTWARE
ARG B:636 , HOH B:1186
BINDING SITE FOR RESIDUE SO4 B 3005
15
BC6
SOFTWARE
ARG B:764
BINDING SITE FOR RESIDUE SO4 B 3009
16
BC7
SOFTWARE
GLY A:881 , LYS A:882 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:912
BINDING SITE FOR RESIDUE SO4 B 3014
17
BC8
SOFTWARE
ARG B:551 , ARG B:554 , TYR D:848
BINDING SITE FOR RESIDUE SO4 B 3019
18
BC9
SOFTWARE
GLN A:528 , ASN B:548 , HOH B:1012 , HOH B:1194 , HOH B:1197 , HOH B:1280
BINDING SITE FOR RESIDUE SO4 B 3022
19
CC1
SOFTWARE
ASN B:738 , GLU B:741 , ARG B:781
BINDING SITE FOR RESIDUE SO4 B 3025
20
CC2
SOFTWARE
ASN B:706 , CYS B:707 , ASN B:864 , THR B:866
BINDING SITE FOR RESIDUE GOL B 3026
21
CC3
SOFTWARE
ASP A:851 , LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 3001
22
CC4
SOFTWARE
ARG A:554 , LYS C:852
BINDING SITE FOR RESIDUE SO4 C 3002
23
CC5
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 3007
24
CC6
SOFTWARE
ARG C:764
BINDING SITE FOR RESIDUE SO4 C 3010
25
CC7
SOFTWARE
HOH C:257 , LYS C:669 , ARG C:894 , ILE C:895 , HOH C:936 , HOH C:952 , HOH C:1276 , HOH D:17 , GLY D:881 , LYS D:882
BINDING SITE FOR RESIDUE SO4 C 3013
26
CC8
SOFTWARE
HOH C:25 , GLY C:881 , LYS C:882 , HOH D:376 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:975 , HOH D:1002 , HOH D:1006
BINDING SITE FOR RESIDUE SO4 D 3016
27
CC9
SOFTWARE
ARG C:551 , ARG C:554
BINDING SITE FOR RESIDUE SO4 C 3017
28
DC1
SOFTWARE
ASN C:548 , HOH C:922 , HOH C:1034 , HOH C:1444 , GLN D:528
BINDING SITE FOR RESIDUE SO4 C 3023
29
DC2
SOFTWARE
ASN C:738 , GLU C:741 , ARG C:781
BINDING SITE FOR RESIDUE SO4 C 3026
30
DC3
SOFTWARE
LEU A:416 , THR A:417 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 3028
31
DC4
SOFTWARE
TYR C:575 , TRP C:582 , ASN C:706 , ASN C:864 , THR C:866
BINDING SITE FOR RESIDUE GOL C 3029
32
DC5
SOFTWARE
ARG D:636 , PRO D:641
BINDING SITE FOR RESIDUE SO4 D 3008
33
DC6
SOFTWARE
ARG D:764
BINDING SITE FOR RESIDUE SO4 D 3012
34
DC7
SOFTWARE
TYR B:848 , ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 3020
35
DC8
SOFTWARE
THR D:445 , ASN D:738 , GLU D:741 , ARG D:781 , HOH D:1287
BINDING SITE FOR RESIDUE SO4 D 3027
36
DC9
SOFTWARE
MET D:578 , ASN D:706 , ASN D:864 , THR D:866
BINDING SITE FOR RESIDUE GOL D 3028
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:672-679,B:672-679,C:672-679,D:67...)
2: ALDEHYDE_DEHYDR_CYS (A:700-711,B:700-711,C:700-711,D:70...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL1L1_RAT
672-679
4
A:672-679
B:672-679
C:672-679
D:672-679
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL1L1_RAT
700-711
4
A:700-711
B:700-711
C:700-711
D:700-711
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rhoa_ (A:)
1b: SCOP_d3rhob_ (B:)
1c: SCOP_d3rhoc_ (C:)
1d: SCOP_d3rhod_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d3rhoa_
A:
1b
d3rhob_
B:
1c
d3rhoc_
C:
1d
d3rhod_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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