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3RHM
Biol. Unit 1
Info
Asym.Unit (334 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E673Q MUTANT OF C-TERMINAL DOMAIN OF 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE
Authors
:
Y. Tsybovsky
Date
:
11 Apr 11 (Deposition) - 27 Apr 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.38
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, S. A. Krupenko
Conserved Catalytic Residues Of The Aldh1L1 Aldehyde Dehydrogenase Domain Control Binding And Discharging Of The Coenzyme.
J. Biol. Chem. V. 286 23357 2011
[
close entry info
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Hetero Components
(2, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
28
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 3001
02
AC2
SOFTWARE
ARG A:636 , PRO A:641
BINDING SITE FOR RESIDUE SO4 A 3006
03
AC3
SOFTWARE
ARG A:764 , TYR A:799
BINDING SITE FOR RESIDUE SO4 A 3011
04
AC4
SOFTWARE
ARG A:551 , ARG A:554 , TYR C:848
BINDING SITE FOR RESIDUE SO4 A 3014
05
AC5
SOFTWARE
ASN A:548 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 3017
06
AC6
SOFTWARE
LYS A:520 , GLN A:528 , HOH A:1145 , ASN B:548
BINDING SITE FOR RESIDUE SO4 A 3018
07
AC7
SOFTWARE
ASN A:738 , GLU A:741 , ARG A:781 , HOH A:1123 , HOH A:1125 , HOH A:1132
BINDING SITE FOR RESIDUE SO4 A 3020
08
AC8
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:1144 , PHE B:875 , GLY B:881 , LYS B:882
BINDING SITE FOR RESIDUE SO4 A 3025
09
AC9
SOFTWARE
GLY A:881 , LYS A:882 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:1004
BINDING SITE FOR RESIDUE SO4 B 3024
10
BC1
SOFTWARE
TYR A:575 , MET A:579 , TRP A:582 , ASN A:706 , CYS A:707 , ILE A:708 , ASN A:864 , THR A:866
BINDING SITE FOR RESIDUE GOL A 2001
11
BC2
SOFTWARE
ARG B:554 , LYS D:852
BINDING SITE FOR RESIDUE SO4 B 3003
12
BC3
SOFTWARE
ASP B:851 , LYS B:852 , HOH B:1122 , ARG D:554
BINDING SITE FOR RESIDUE SO4 B 3004
13
BC4
SOFTWARE
ARG B:636 , PRO B:641
BINDING SITE FOR RESIDUE SO4 B 3005
14
BC5
SOFTWARE
ARG B:764
BINDING SITE FOR RESIDUE SO4 B 3009
15
BC6
SOFTWARE
ARG B:551 , ARG B:554 , HOH B:1132 , HOH B:1149
BINDING SITE FOR RESIDUE SO4 B 3015
16
BC7
SOFTWARE
ASN B:738 , GLU B:741 , ARG B:781 , HOH B:1115
BINDING SITE FOR RESIDUE SO4 B 3021
17
BC8
SOFTWARE
TYR B:575 , MET B:579 , TRP B:582 , ASN B:706 , CYS B:707 , ASN B:864 , THR B:866
BINDING SITE FOR RESIDUE GOL B 2002
18
BC9
SOFTWARE
ARG A:554 , LYS C:852 , HOH C:1075
BINDING SITE FOR RESIDUE SO4 C 3002
19
CC1
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 3007
20
CC2
SOFTWARE
ARG C:764
BINDING SITE FOR RESIDUE SO4 C 3010
21
CC3
SOFTWARE
ARG C:551 , ARG C:554 , HOH C:1151
BINDING SITE FOR RESIDUE SO4 C 3013
22
CC4
SOFTWARE
ASN C:548 , LYS D:520 , GLN D:528
BINDING SITE FOR RESIDUE SO4 C 3019
23
CC5
SOFTWARE
ASN C:738 , ARG C:781 , HOH C:1042 , HOH C:1152
BINDING SITE FOR RESIDUE SO4 C 3022
24
CC6
SOFTWARE
LYS C:669 , ARG C:894 , ILE C:895 , PHE D:880 , GLY D:881 , LYS D:882 , HOH D:1003
BINDING SITE FOR RESIDUE SO4 C 3027
25
CC7
SOFTWARE
LEU A:416 , THR A:417 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 3028
26
CC8
SOFTWARE
TYR C:575 , TRP C:582 , ASN C:706 , CYS C:707 , ASN C:864 , THR C:866
BINDING SITE FOR RESIDUE GOL C 2003
27
CC9
SOFTWARE
ARG D:636 , PRO D:641 , HOH D:1139
BINDING SITE FOR RESIDUE SO4 D 3008
28
DC1
SOFTWARE
ARG D:764
BINDING SITE FOR RESIDUE SO4 D 3012
29
DC2
SOFTWARE
TYR B:848 , ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 3016
30
DC3
SOFTWARE
THR D:445 , ASN D:738 , GLU D:741 , ARG D:781
BINDING SITE FOR RESIDUE SO4 D 3023
31
DC4
SOFTWARE
PHE C:875 , GLY C:881 , LYS C:882 , LYS D:669 , ARG D:894 , ILE D:895 , HOH D:1004 , HOH D:1084
BINDING SITE FOR RESIDUE SO4 D 3026
32
DC5
SOFTWARE
TYR D:575 , TRP D:582 , ASN D:706 , CYS D:707 , ILE D:708 , ASN D:864 , THR D:866
BINDING SITE FOR RESIDUE GOL D 2004
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:672-679,B:672-679,C:672-679,D:67...)
2: ALDEHYDE_DEHYDR_CYS (A:700-711,B:700-711,C:700-711,D:70...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL1L1_RAT
672-679
4
A:672-679
B:672-679
C:672-679
D:672-679
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL1L1_RAT
700-711
4
A:700-711
B:700-711
C:700-711
D:700-711
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rhma_ (A:)
1b: SCOP_d3rhmb_ (B:)
1c: SCOP_d3rhmc_ (C:)
1d: SCOP_d3rhmd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d3rhma_
A:
1b
d3rhmb_
B:
1c
d3rhmc_
C:
1d
d3rhmd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain D
Asymmetric Unit 1
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