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3RHJ
Asym. Unit
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Asym.Unit (358 KB)
Biol.Unit 1 (350 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E673A MUTANT OF THE C-TERMINAL DOMAIN OF RAT 10'FORMYLTETRAHYDROFOLATE DEHYDROGENASE IN COMPLEX WITH CO-PURIFIED NADP
Authors
:
Y. Tsybovsky
Date
:
11 Apr 11 (Deposition) - 27 Apr 11 (Release) - 31 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fdh, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tsybovsky, S. A. Krupenko
Conserved Catalytic Residues Of The Aldh1L1 Aldehyde Dehydrogenase Domain Control Binding And Discharging Of The Coenzyme.
J. Biol. Chem. V. 286 23357 2011
[
close entry info
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
2b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
2c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
2d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3
SO4
24
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:570 , ILE A:571 , TRP A:573 , ASN A:574 , LYS A:597 , ALA A:599 , GLN A:600 , SER A:629 , GLY A:630 , GLY A:634 , GLN A:635 , PHE A:648 , THR A:649 , GLY A:650 , SER A:651 , VAL A:654 , HIS A:657 , ILE A:658 , ALA A:673 , LEU A:674 , GLY A:675 , CYS A:707 , GLU A:804 , PHE A:806 , LEU A:834 , PHE A:872 , HOH A:1095 , HOH A:1110 , HOH A:1111 , HOH A:1166 , HOH A:1257 , HOH A:1262 , HOH A:1265 , HOH A:1276 , HOH A:1295 , HOH A:1332
BINDING SITE FOR RESIDUE NAP A 101
02
AC2
SOFTWARE
LYS A:852 , ARG C:554
BINDING SITE FOR RESIDUE SO4 A 102
03
AC3
SOFTWARE
ARG A:636
BINDING SITE FOR RESIDUE SO4 A 103
04
AC4
SOFTWARE
ARG A:551 , ARG A:554 , LYS C:852
BINDING SITE FOR RESIDUE SO4 A 104
05
AC5
SOFTWARE
ASN A:548 , HOH A:1138 , GLN B:528
BINDING SITE FOR RESIDUE SO4 A 105
06
AC6
SOFTWARE
ASN A:738 , GLU A:741 , ARG A:781 , HOH C:1285
BINDING SITE FOR RESIDUE SO4 A 106
07
AC7
SOFTWARE
LYS A:669 , LEU A:893 , ARG A:894 , ILE A:895 , HOH A:1144 , HOH A:1288 , GLY B:881 , LYS B:882 , HOH B:1001
BINDING SITE FOR RESIDUE SO4 A 107
08
AC8
SOFTWARE
TYR A:575 , MET A:578 , TRP A:582 , ASN A:706 , CYS A:707 , THR A:866 , HOH A:1348
BINDING SITE FOR RESIDUE GOL A 108
09
AC9
SOFTWARE
VAL B:570 , ILE B:571 , TRP B:573 , ASN B:574 , LYS B:597 , ALA B:599 , GLN B:600 , SER B:629 , GLY B:630 , GLY B:634 , GLN B:635 , PHE B:648 , THR B:649 , GLY B:650 , SER B:651 , VAL B:654 , HIS B:657 , ILE B:658 , ALA B:673 , LEU B:674 , GLY B:675 , CYS B:707 , GLU B:804 , PHE B:806 , LEU B:834 , PHE B:872 , HOH B:1040 , HOH B:1060 , HOH B:1143 , HOH B:1149 , HOH B:1176 , HOH B:1264 , HOH B:1281 , HOH B:1297 , HOH B:1314 , HOH B:1320
BINDING SITE FOR RESIDUE NAP B 101
10
BC1
SOFTWARE
ARG B:554 , LYS D:852 , HOH D:1179
BINDING SITE FOR RESIDUE SO4 B 102
11
BC2
SOFTWARE
ARG B:636 , PRO B:641 , HOH B:1270 , HOH B:1319
BINDING SITE FOR RESIDUE SO4 B 103
12
BC3
SOFTWARE
ARG B:551 , ARG B:554 , TYR D:848
BINDING SITE FOR RESIDUE SO4 B 104
13
BC4
SOFTWARE
GLN A:528 , ASN B:548 , HOH B:1095 , HOH B:1137 , HOH B:1251 , HOH B:1253
BINDING SITE FOR RESIDUE SO4 B 105
14
BC5
SOFTWARE
THR B:445 , ASN B:738 , GLU B:741 , ARG B:781 , HOH B:1141 , HOH B:1279
BINDING SITE FOR RESIDUE SO4 B 106
15
BC6
SOFTWARE
GLY A:881 , LYS A:882 , HOH A:1002 , LYS B:669 , LEU B:893 , ARG B:894 , ILE B:895 , HOH B:1292 , HOH B:1339
BINDING SITE FOR RESIDUE SO4 B 107
16
BC7
SOFTWARE
TYR B:575 , ASN B:706 , ASN B:864 , THR B:866 , HOH B:1344
BINDING SITE FOR RESIDUE GOL B 108
17
BC8
SOFTWARE
VAL C:570 , ILE C:571 , PRO C:572 , TRP C:573 , ASN C:574 , LYS C:597 , ALA C:599 , GLN C:600 , GLY C:630 , GLY C:634 , GLN C:635 , PHE C:648 , THR C:649 , GLY C:650 , SER C:651 , VAL C:654 , HIS C:657 , ILE C:658 , ALA C:673 , LEU C:674 , GLY C:675 , CYS C:707 , GLU C:804 , PHE C:806 , LEU C:834 , PHE C:872 , HOH C:1056 , HOH C:1065 , HOH C:1087 , HOH C:1091 , HOH C:1132 , HOH C:1133 , HOH C:1218 , HOH C:1312 , HOH C:1334 , HOH C:1381
BINDING SITE FOR RESIDUE NAP C 101
18
BC9
SOFTWARE
ARG A:554 , LYS C:852
BINDING SITE FOR RESIDUE SO4 C 102
19
CC1
SOFTWARE
ARG C:636 , PRO C:641
BINDING SITE FOR RESIDUE SO4 C 103
20
CC2
SOFTWARE
ARG C:551 , ARG C:554
BINDING SITE FOR RESIDUE SO4 C 104
21
CC3
SOFTWARE
ASN C:548 , HOH C:1233 , HOH C:1243 , HOH C:1283 , HOH C:1390 , GLN D:528
BINDING SITE FOR RESIDUE SO4 C 105
22
CC4
SOFTWARE
LYS A:415 , ASN C:738 , ARG C:781 , HOH C:1039 , HOH C:1328
BINDING SITE FOR RESIDUE SO4 C 106
23
CC5
SOFTWARE
LYS C:669 , LEU C:893 , ARG C:894 , ILE C:895 , HOH C:1072 , HOH C:1140 , HOH C:1255 , GLY D:881 , LYS D:882 , HOH D:1002
BINDING SITE FOR RESIDUE SO4 C 107
24
CC6
SOFTWARE
LEU A:416 , THR A:417 , LYS C:415 , ARG C:742
BINDING SITE FOR RESIDUE SO4 C 108
25
CC7
SOFTWARE
TYR C:575 , TRP C:582 , ASN C:706 , CYS C:707 , THR C:866 , HOH C:1330
BINDING SITE FOR RESIDUE GOL C 109
26
CC8
SOFTWARE
VAL D:570 , ILE D:571 , TRP D:573 , ASN D:574 , LYS D:597 , ALA D:599 , GLN D:600 , SER D:629 , GLY D:630 , GLY D:634 , GLN D:635 , PHE D:648 , THR D:649 , GLY D:650 , SER D:651 , VAL D:654 , HIS D:657 , ILE D:658 , ALA D:673 , LEU D:674 , GLY D:675 , CYS D:707 , GLU D:804 , PHE D:806 , LEU D:834 , PHE D:872 , HOH D:1035 , HOH D:1049 , HOH D:1085 , HOH D:1135 , HOH D:1198 , HOH D:1284 , HOH D:1298 , HOH D:1307 , HOH D:1319
BINDING SITE FOR RESIDUE NAP D 101
27
CC9
SOFTWARE
ASP B:851 , LYS B:852 , HOH B:1125 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 102
28
DC1
SOFTWARE
ARG D:636 , PRO D:641 , HOH D:1338
BINDING SITE FOR RESIDUE SO4 D 103
29
DC2
SOFTWARE
ARG D:551 , ARG D:554
BINDING SITE FOR RESIDUE SO4 D 104
30
DC3
SOFTWARE
ASN D:738 , GLU D:741 , ARG D:781 , HOH D:1153
BINDING SITE FOR RESIDUE SO4 D 105
31
DC4
SOFTWARE
GLY C:881 , LYS C:882 , HOH C:1006 , LYS D:669 , LEU D:893 , ARG D:894 , ILE D:895 , HOH D:1227 , HOH D:1309
BINDING SITE FOR RESIDUE SO4 D 106
32
DC5
SOFTWARE
MET D:578 , ASN D:706 , THR D:866 , HOH D:1351
BINDING SITE FOR RESIDUE GOL D 107
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:672-679,B:672-679,C:672-679,D:67...)
2: ALDEHYDE_DEHYDR_CYS (A:700-711,B:700-711,C:700-711,D:70...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
AL1L1_RAT
672-679
4
A:672-679
B:672-679
C:672-679
D:672-679
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
AL1L1_RAT
700-711
4
A:700-711
B:700-711
C:700-711
D:700-711
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rhja_ (A:)
1b: SCOP_d3rhjb_ (B:)
1c: SCOP_d3rhjc_ (C:)
1d: SCOP_d3rhjd_ (D:)
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Protein Domains
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)
(
)
Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d3rhja_
A:
1b
d3rhjb_
B:
1c
d3rhjc_
C:
1d
d3rhjd_
D:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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